Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 IPO5P1-202ENST00000600039 287 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC020910.2-201ENST00000603635 610 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC007566.2-201ENST00000603642 413 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AL121890.3-201ENST00000618494 516 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS39Q96JC1 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS39Q96JC1 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC107081.3-201ENST00000612715 2034 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS39Q96JC1 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS39Q96JC1 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 AF127577.6-201ENST00000623352 2191 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS39Q96JC1 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 DSTNP4-201ENST00000399472 474 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 AC108032.1-201ENST00000416706 207 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 AC073310.1-201ENST00000423226 1033 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 MTND2P11-201ENST00000423638 648 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 CHIAP3-201ENST00000423668 1133 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 RPL21P112-201ENST00000434403 463 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS39Q96JC1 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 NPM1P17-201ENST00000479221 602 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 RPL31P13-201ENST00000484151 370 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS39Q96JC1 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 SETP12-201ENST00000514068 805 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 ZNF192P1-203ENST00000565888 810 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 MIR4504-201ENST00000577413 92 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 AC092474.3-201ENST00000603022 568 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 MRPS35P3-201ENST00000603189 709 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 AL591424.2-201ENST00000617023 128 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 U73479.1-201ENST00000618062 168 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 AL356094.1-201ENST00000624663 1212 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 PABPC1P7-201ENST00000413177 1513 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 BDP1P-201ENST00000582658 1990 ntBASIC4.03□□□□□ -1.76
VPS39Q96JC1 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS39Q96JC1 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS39Q96JC1 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS39Q96JC1 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS39Q96JC1 AL122126.1-201ENST00000546905 1318 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 RNU6-1339P-201ENST00000363574 91 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 RNA5SP27-201ENST00000363839 119 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 MIR607-201ENST00000385241 96 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 AL592293.2-201ENST00000422292 996 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 CYCSP43-201ENST00000438233 310 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 RPS4XP4-201ENST00000443195 763 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC239367.2-201ENST00000447309 705 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 AL035407.2-201ENST00000454090 378 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 AP000893.1-201ENST00000474462 794 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC069499.1-201ENST00000489433 509 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 RN7SL604P-201ENST00000492589 296 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 C1GALT1P3-201ENST00000522049 819 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 MTCYBP28-201ENST00000566728 1132 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 AL023583.1-201ENST00000607518 1143 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AP003400.6-201ENST00000624698 740 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 AC092608.3-201ENST00000625017 386 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 MIR3653-201ENST00000625572 110 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 IPO8P1-201ENST00000455509 3109 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS39Q96JC1 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS39Q96JC1 LARP1BP1-201ENST00000506036 1359 ntBASIC4.02□□□□□ -1.77
VPS39Q96JC1 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS39Q96JC1 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 USP8P1-201ENST00000494673 3183 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 SNORA7.2-201ENST00000364446 145 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS39Q96JC1 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 SNORA56-201ENST00000383966 129 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 179.2 ms