Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AC133552.1-201ENST00000569988 4007 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AL512646.1-201ENST00000269395 1077 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 SPRR2C-201ENST00000290702 219 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 SNORD116-4-201ENST00000384733 96 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 MIR483-201ENST00000385070 76 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AL022722.2-201ENST00000402519 180 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AL138880.1-201ENST00000405824 642 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 RPS29P17-201ENST00000430795 166 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 ACTR3P2-201ENST00000439585 1257 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 NCOR1P1-202ENST00000486162 291 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AC069304.1-201ENST00000491593 704 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 ATP1B1P1-201ENST00000509767 915 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 MTCO3P7-201ENST00000510008 774 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 RNU6-885P-201ENST00000516607 104 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 RFPL1S-203ENST00000539579 330 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 LSM3P2-201ENST00000551246 273 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 MIR6133-201ENST00000617057 108 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AC244100.1-202ENST00000621554 382 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AL390862.1-201ENST00000635467 1469 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AC011447.7-201ENST00000624228 1590 ntBASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMC1BQ8NDV3 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 ANKRD20A17P-201ENST00000511745 1330 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 RNU6-582P-201ENST00000362989 107 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 SNORA70.6-201ENST00000383934 134 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AL139098.1-201ENST00000407291 389 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC010153.1-201ENST00000432862 727 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 PPIAP13-201ENST00000434706 478 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 MTCYBP39-201ENST00000437562 491 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC005912.1-201ENST00000495392 255 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC011352.3-201ENST00000505162 593 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 MTCO1P30-201ENST00000515244 580 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 RN7SKP31-201ENST00000516354 278 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 IGLVIV-65-201ENST00000517313 360 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AP003730.1-201ENST00000524605 285 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 PSMB7P1-201ENST00000556349 514 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC103987.3-201ENST00000582071 292 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC119751.7-201ENST00000600494 245 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC091488.1-201ENST00000604239 660 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AC064872.1-201ENST00000604823 1072 ntBASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SMC1BQ8NDV3 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 AC092681.1-201ENST00000297369 291 ntBASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 RNU6-492P-201ENST00000363035 104 ntBASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.74□□□□□ -1.49
SMC1BQ8NDV3 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms