Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MFSD8-245ENST00000641743 948 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 SNORD116.1-201ENST00000365628 92 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 SNORA40.2-201ENST00000390847 128 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 E2F6P2-201ENST00000420708 748 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AL592293.2-201ENST00000422292 996 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 FABP7P1-201ENST00000424004 391 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 RPF2P1-201ENST00000424137 906 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC093155.1-201ENST00000440164 826 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC000111.2-201ENST00000448200 210 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC079776.3-201ENST00000450665 370 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AL139824.2-201ENST00000458731 1095 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC010326.1-201ENST00000462726 602 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC091167.1-201ENST00000492017 396 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC098862.1-201ENST00000504991 413 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC113347.3-201ENST00000509113 148 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC008885.2-201ENST00000509506 930 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC112673.1-201ENST00000513168 575 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 MTCO1P35-201ENST00000515270 228 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 GAS5-AS1-201ENST00000602767 694 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AL512782.1-201ENST00000603093 364 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AL035411.2-201ENST00000604022 421 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC021749.1-201ENST00000604322 607 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC016877.3-201ENST00000606778 504 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC019206.1-201ENST00000621938 425 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 OR1S1-201ENST00000624470 978 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC090897.3-201ENST00000636973 1157 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 ZNF876P-202ENST00000398732 1485 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC087190.4-201ENST00000574616 8334 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 SEPT7P7-201ENST00000420492 1301 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC108751.5-201ENST00000492880 1336 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 EEF1A1P42-201ENST00000613436 1331 ntBASIC3.91□□□□□ -1.78
PDLIM3Q53GG5 AC012020.1-201ENST00000624541 1728 ntBASIC3.9□□□□□ -1.78
PDLIM3Q53GG5 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.78
PDLIM3Q53GG5 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.9□□□□□ -1.78
PDLIM3Q53GG5 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
PDLIM3Q53GG5 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
PDLIM3Q53GG5 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AL355852.1-201ENST00000454081 1771 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AP005901.5-201ENST00000545779 1796 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP502-201ENST00000362694 119 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 Y_RNA.333-201ENST00000365274 102 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 RNU6-413P-201ENST00000384115 107 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 ATP5F1P3-201ENST00000397213 657 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC004448.2-201ENST00000422360 586 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC092832.1-201ENST00000422934 400 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 XKRYP1-201ENST00000423438 492 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 XKRYP2-201ENST00000432915 492 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 SEPT7P5-201ENST00000434048 306 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AL451139.1-201ENST00000434718 346 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 MTND1P26-201ENST00000440488 538 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 FGF7P5-201ENST00000441829 291 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 RPL36AP15-201ENST00000444514 266 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AL358232.1-201ENST00000448030 501 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 SNRPGP5-201ENST00000456003 220 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 SNORD11.1-201ENST00000459482 85 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms