Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC112673.1-201ENST00000513168 575 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 Y_RNA.719-201ENST00000517156 106 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC005868.1-201ENST00000536421 331 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC022662.1-201ENST00000580252 331 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AL390816.3-201ENST00000604527 1066 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AL160281.1-201ENST00000605307 311 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AL008729.2-201ENST00000606393 473 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC007349.4-201ENST00000608114 532 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC087683.2-201ENST00000611384 326 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC013470.4-201ENST00000619978 986 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC032011.1-201ENST00000611703 1549 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC092435.4-201ENST00000623012 4159 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 MTND4P8-201ENST00000514997 1362 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 NACA3P-201ENST00000359690 648 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 SNORD65.1-201ENST00000390889 71 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AP000580.1-201ENST00000404439 358 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 PPIAP31-201ENST00000405422 495 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AL139098.1-201ENST00000407291 389 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 CYCSP19-201ENST00000411715 316 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 RPL23AP26-201ENST00000412728 464 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 PRELID3BP11-201ENST00000414230 479 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AL356387.2-201ENST00000422272 243 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AL591719.1-201ENST00000444669 744 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AC005008.1-201ENST00000456151 612 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 PNPLA4P1-201ENST00000458328 305 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 UQCRHP4-201ENST00000471686 272 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 DEFB109F-201ENST00000491870 277 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AC084024.2-201ENST00000503480 791 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 KRT19P6-201ENST00000510983 209 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 RPL7L1P13-201ENST00000511702 739 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AP001207.1-201ENST00000524051 481 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 LRRC34P1-201ENST00000542742 915 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AL049839.1-201ENST00000556151 657 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AADACP1-206ENST00000561502 1193 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AC009097.3-201ENST00000563557 1018 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 SNORA74C-1-201ENST00000580726 201 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AC115286.1-201ENST00000604298 434 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AC107952.2-201ENST00000606048 486 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AC010424.2-201ENST00000607594 443 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AL133243.1-201ENST00000614487 366 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AC079395.3-201ENST00000615161 484 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 AL022401.1-201ENST00000619498 108 ntBASIC4.45□□□□□ -1.7
COL28A1Q2UY09 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL28A1Q2UY09 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC114546.3-201ENST00000623582 1734 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AL442639.1-201ENST00000625030 1899 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 RNU6-560P-201ENST00000364007 108 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 RNA5SP345-201ENST00000410646 108 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AL450992.3-201ENST00000413192 568 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC233981.1-201ENST00000423224 461 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 RPL7P2-201ENST00000427639 268 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms