Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USF1P22415 RPL37P1-201ENST00000432310 284 ntBASIC3.37□□□□□ -1.87
USF1P22415 PPIAP17-201ENST00000438507 471 ntBASIC3.37□□□□□ -1.87
USF1P22415 XKRY2-201ENST00000442362 1093 ntBASIC3.37□□□□□ -1.87
USF1P22415 ACTR3P3-201ENST00000480448 893 ntBASIC3.37□□□□□ -1.87
USF1P22415 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.37□□□□□ -1.87
USF1P22415 SNORA31.13-201ENST00000516624 135 ntBASIC3.37□□□□□ -1.87
USF1P22415 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC3.37□□□□□ -1.87
USF1P22415 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.37□□□□□ -1.87
USF1P22415 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.37□□□□□ -1.87
USF1P22415 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC3.37□□□□□ -1.87
USF1P22415 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC3.37□□□□□ -1.87
USF1P22415 AC091516.1-201ENST00000549191 703 ntBASIC3.37□□□□□ -1.87
USF1P22415 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.37□□□□□ -1.87
USF1P22415 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.37□□□□□ -1.87
USF1P22415 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.37□□□□□ -1.87
USF1P22415 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.37□□□□□ -1.87
USF1P22415 AL392112.1-201ENST00000605115 829 ntBASIC3.37□□□□□ -1.87
USF1P22415 AP003117.2-201ENST00000606010 545 ntBASIC3.37□□□□□ -1.87
USF1P22415 AC244100.1-202ENST00000621554 382 ntBASIC3.37□□□□□ -1.87
USF1P22415 ERCC6-202ENST00000374127 1782 ntBASIC3.37□□□□□ -1.87
USF1P22415 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USF1P22415 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USF1P22415 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USF1P22415 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USF1P22415 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USF1P22415 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.36□□□□□ -1.87
USF1P22415 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
USF1P22415 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USF1P22415 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.36□□□□□ -1.87
USF1P22415 RAD1P1-201ENST00000231383 813 ntBASIC3.36□□□□□ -1.87
USF1P22415 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USF1P22415 OR4A15-201ENST00000314706 1035 ntBASIC3.36□□□□□ -1.87
USF1P22415 SNORA70.4-201ENST00000365509 134 ntBASIC3.36□□□□□ -1.87
USF1P22415 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.36□□□□□ -1.87
USF1P22415 MIR142-201ENST00000384835 87 ntBASIC3.36□□□□□ -1.87
USF1P22415 MIR124-3-201ENST00000384866 87 ntBASIC3.36□□□□□ -1.87
USF1P22415 SNORA11.1-201ENST00000408133 129 ntBASIC3.36□□□□□ -1.87
USF1P22415 RN7SKP156-201ENST00000410308 342 ntBASIC3.36□□□□□ -1.87
USF1P22415 CRYBB2P1-203ENST00000415709 538 ntBASIC3.36□□□□□ -1.87
USF1P22415 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.36□□□□□ -1.87
USF1P22415 LINC01347-201ENST00000417964 355 ntBASIC3.36□□□□□ -1.87
USF1P22415 ELOCP6-201ENST00000429066 328 ntBASIC3.36□□□□□ -1.87
USF1P22415 MTND4LP14-201ENST00000429447 288 ntBASIC3.36□□□□□ -1.87
USF1P22415 USP9YP7-201ENST00000436723 430 ntBASIC3.36□□□□□ -1.87
USF1P22415 RPL7P29-201ENST00000437151 728 ntBASIC3.36□□□□□ -1.87
USF1P22415 NOTCH2P1-201ENST00000443481 624 ntBASIC3.36□□□□□ -1.87
USF1P22415 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.36□□□□□ -1.87
USF1P22415 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.36□□□□□ -1.87
USF1P22415 USP9YP32-201ENST00000452432 430 ntBASIC3.36□□□□□ -1.87
USF1P22415 ELOCP12-201ENST00000458706 328 ntBASIC3.36□□□□□ -1.87
USF1P22415 AC096992.1-201ENST00000459808 709 ntBASIC3.36□□□□□ -1.87
USF1P22415 AC087385.1-201ENST00000475062 312 ntBASIC3.36□□□□□ -1.87
USF1P22415 RPS3AP6-201ENST00000484430 795 ntBASIC3.36□□□□□ -1.87
USF1P22415 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.36□□□□□ -1.87
USF1P22415 AC110792.2-201ENST00000510278 224 ntBASIC3.36□□□□□ -1.87
USF1P22415 RN7SKP157-201ENST00000516174 282 ntBASIC3.36□□□□□ -1.87
USF1P22415 SNORA48.9-201ENST00000516419 162 ntBASIC3.36□□□□□ -1.87
USF1P22415 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.36□□□□□ -1.87
USF1P22415 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.36□□□□□ -1.87
USF1P22415 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.36□□□□□ -1.87
USF1P22415 AC025260.1-201ENST00000548858 430 ntBASIC3.36□□□□□ -1.87
USF1P22415 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.36□□□□□ -1.87
USF1P22415 RPL23AP87-202ENST00000573039 466 ntBASIC3.36□□□□□ -1.87
USF1P22415 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.36□□□□□ -1.87
USF1P22415 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC3.36□□□□□ -1.87
USF1P22415 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.36□□□□□ -1.87
USF1P22415 AL049634.3-201ENST00000604968 457 ntBASIC3.36□□□□□ -1.87
USF1P22415 SNORA51-201ENST00000606420 132 ntBASIC3.36□□□□□ -1.87
USF1P22415 AC090246.1-201ENST00000616499 426 ntBASIC3.36□□□□□ -1.87
USF1P22415 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC3.36□□□□□ -1.87
USF1P22415 C2orf27A-204ENST00000623058 969 ntBASIC3.36□□□□□ -1.87
USF1P22415 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.36□□□□□ -1.87
USF1P22415 AC012442.3-202ENST00000636742 206 ntBASIC3.36□□□□□ -1.87
USF1P22415 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
USF1P22415 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USF1P22415 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
USF1P22415 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.36□□□□□ -1.87
USF1P22415 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.36□□□□□ -1.87
USF1P22415 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
USF1P22415 SNORD46.1-201ENST00000364139 104 ntBASIC3.35□□□□□ -1.87
USF1P22415 SNORD115-48-201ENST00000364764 76 ntBASIC3.35□□□□□ -1.87
USF1P22415 RNA5SP97-201ENST00000365006 84 ntBASIC3.35□□□□□ -1.87
USF1P22415 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
USF1P22415 AL159169.1-201ENST00000421119 127 ntBASIC3.35□□□□□ -1.87
USF1P22415 NPM1P34-201ENST00000428821 893 ntBASIC3.35□□□□□ -1.87
USF1P22415 YME1L1P1-201ENST00000429435 297 ntBASIC3.35□□□□□ -1.87
USF1P22415 TRIM60P13-201ENST00000432350 1283 ntBASIC3.35□□□□□ -1.87
USF1P22415 ZNF965P-201ENST00000432501 817 ntBASIC3.35□□□□□ -1.87
USF1P22415 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 MTND2P25-201ENST00000449028 610 ntBASIC3.35□□□□□ -1.87
USF1P22415 MTND3P4-201ENST00000453537 303 ntBASIC3.35□□□□□ -1.87
USF1P22415 RN7SL323P-201ENST00000494712 295 ntBASIC3.35□□□□□ -1.87
USF1P22415 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.35□□□□□ -1.87
USF1P22415 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 AC025554.1-201ENST00000505641 188 ntBASIC3.35□□□□□ -1.87
USF1P22415 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.35□□□□□ -1.87
USF1P22415 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms