Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.82□□□□□ -1.8
SSX3Q99909 RN7SL652P-201ENST00000577769 300 ntBASIC3.82□□□□□ -1.8
SSX3Q99909 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
SSX3Q99909 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.82□□□□□ -1.8
SSX3Q99909 OR4G1P-201ENST00000588632 938 ntBASIC3.82□□□□□ -1.8
SSX3Q99909 AC007687.1-201ENST00000602704 304 ntBASIC3.82□□□□□ -1.8
SSX3Q99909 AL020997.3-201ENST00000602843 359 ntBASIC3.82□□□□□ -1.8
SSX3Q99909 AC018754.1-201ENST00000607486 925 ntBASIC3.82□□□□□ -1.8
SSX3Q99909 AC092953.2-201ENST00000608000 699 ntBASIC3.82□□□□□ -1.8
SSX3Q99909 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.82□□□□□ -1.8
SSX3Q99909 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SSX3Q99909 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.82□□□□□ -1.8
SSX3Q99909 U73479.1-201ENST00000618062 168 ntBASIC3.82□□□□□ -1.8
SSX3Q99909 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.82□□□□□ -1.8
SSX3Q99909 AP000346.3-201ENST00000622821 210 ntBASIC3.82□□□□□ -1.8
SSX3Q99909 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.82□□□□□ -1.8
SSX3Q99909 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC3.82□□□□□ -1.8
SSX3Q99909 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SSX3Q99909 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SSX3Q99909 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SSX3Q99909 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SSX3Q99909 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
SSX3Q99909 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
SSX3Q99909 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SSX3Q99909 GABPAP-201ENST00000419271 1356 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SSX3Q99909 MIR513A2-201ENST00000385249 127 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 GSTA8P-201ENST00000404253 637 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.81□□□□□ -1.8
SSX3Q99909 BTF3P8-201ENST00000414577 526 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 LIPT1P1-201ENST00000415870 1186 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.81□□□□□ -1.8
SSX3Q99909 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.81□□□□□ -1.8
SSX3Q99909 AC092634.2-201ENST00000428146 1010 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.81□□□□□ -1.8
SSX3Q99909 RPS27AP15-201ENST00000447672 466 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
SSX3Q99909 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.81□□□□□ -1.8
SSX3Q99909 AP000893.1-201ENST00000474462 794 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AC104982.1-201ENST00000478775 574 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 PPBPP1-201ENST00000510807 373 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AC010374.2-201ENST00000512933 535 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.81□□□□□ -1.8
SSX3Q99909 snoZ278.1-201ENST00000517059 112 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 RN7SKP92-201ENST00000517266 244 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.81□□□□□ -1.8
SSX3Q99909 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SSX3Q99909 AC118942.1-201ENST00000529674 1035 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AC100770.1-201ENST00000532310 322 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.81□□□□□ -1.8
SSX3Q99909 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.81□□□□□ -1.8
SSX3Q99909 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.81□□□□□ -1.8
SSX3Q99909 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.81□□□□□ -1.8
SSX3Q99909 AC091515.1-201ENST00000548110 679 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AC087897.1-201ENST00000550134 156 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AL110118.1-201ENST00000553543 400 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.81□□□□□ -1.8
SSX3Q99909 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.81□□□□□ -1.8
SSX3Q99909 AC090330.1-201ENST00000588646 764 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 VN1R7P-201ENST00000619242 903 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.81□□□□□ -1.8
SSX3Q99909 AC099654.8-201ENST00000637757 681 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SSX3Q99909 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SSX3Q99909 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
SSX3Q99909 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.81□□□□□ -1.8
SSX3Q99909 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.81□□□□□ -1.8
SSX3Q99909 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SSX3Q99909 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.81□□□□□ -1.8
SSX3Q99909 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.81□□□□□ -1.8
SSX3Q99909 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.81□□□□□ -1.8
SSX3Q99909 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SSX3Q99909 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SSX3Q99909 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SSX3Q99909 PABPC1P7-201ENST00000413177 1513 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.8□□□□□ -1.8
SSX3Q99909 DHX40P1-201ENST00000588725 1412 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SSX3Q99909 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.8□□□□□ -1.8
SSX3Q99909 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
SSX3Q99909 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
SSX3Q99909 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SSX3Q99909 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SSX3Q99909 OR4K15-201ENST00000305051 1216 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SSX3Q99909 SNORA71.2-201ENST00000364941 134 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 RNU6-444P-201ENST00000383988 108 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 RPS3AP23-201ENST00000401762 784 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 MIR1250-201ENST00000408098 113 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 RPL23AP26-201ENST00000412728 464 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 AL807761.1-201ENST00000417622 171 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 SFR1P2-201ENST00000421841 730 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 AL645608.4-201ENST00000423619 154 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 DNAJC19P7-201ENST00000428811 344 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC3.8□□□□□ -1.8
SSX3Q99909 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC3.8□□□□□ -1.8
SSX3Q99909 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.8□□□□□ -1.8
SSX3Q99909 RPS26P56-201ENST00000444468 240 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 ARL2BPP10-201ENST00000446487 531 ntBASIC3.8□□□□□ -1.8
SSX3Q99909 AL162151.2-201ENST00000448875 158 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms