Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL353746.1-201ENST00000566293 6881 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
VMP1Q96GC9 FAM91A3P-201ENST00000456826 2544 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VMP1Q96GC9 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
VMP1Q96GC9 RNU6-549P-201ENST00000384433 107 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 AL138880.1-201ENST00000405824 642 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 VN1R8P-201ENST00000407739 893 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 DNAJC19P7-201ENST00000428811 344 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 CNOT7P1-201ENST00000429006 852 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 AL096829.2-201ENST00000446582 742 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 NF1P3-201ENST00000457709 450 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 RN7SL481P-201ENST00000477764 299 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 HMGB1P38-201ENST00000490557 577 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 AK3P4-201ENST00000504283 583 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 AC118282.2-201ENST00000508739 374 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 HNRNPKP5-201ENST00000515300 253 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 AP001781.1-201ENST00000530977 207 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 AC005412.1-201ENST00000580812 1049 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VMP1Q96GC9 AL359757.1-201ENST00000623176 255 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.28□□□□□ -1.72
VMP1Q96GC9 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VMP1Q96GC9 OR56B2P-202ENST00000641377 2453 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.28□□□□□ -1.72
VMP1Q96GC9 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 MAPK10-253ENST00000641010 4072 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 RNA5SP443-201ENST00000363083 132 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 RNU6-353P-201ENST00000364266 108 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 SNORA51.2-201ENST00000364595 132 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 RNU6-619P-201ENST00000365146 108 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 MIR129-1-201ENST00000384972 72 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 RNU6-328P-201ENST00000390887 106 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 TMSB4XP8-201ENST00000402089 135 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 MTCO2P31-201ENST00000402702 684 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 GSTA8P-201ENST00000404253 637 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 TMSB4XP6-201ENST00000415187 135 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 MTND2P16-201ENST00000419987 799 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 TMSB4XP1-201ENST00000424567 135 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AL592437.1-201ENST00000443781 492 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC239367.2-201ENST00000447309 705 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 ISCUP1-201ENST00000454451 448 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 CFTRP1-201ENST00000456646 183 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 RPS17P11-201ENST00000474297 293 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 UBE2CP3-201ENST00000502715 450 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC006518.2-201ENST00000542513 940 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 AC124312.6-202ENST00000623624 418 ntBASIC4.27□□□□□ -1.73
VMP1Q96GC9 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
VMP1Q96GC9 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.27□□□□□ -1.73
VMP1Q96GC9 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms