Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC096644.3-201ENST00000416788 338 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC005019.1-201ENST00000436455 431 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AL162388.1-201ENST00000450912 352 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 RPL23AP14-201ENST00000468281 468 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC132942.1-201ENST00000486753 483 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC018442.3-201ENST00000523025 183 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AL451007.1-201ENST00000595491 289 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC078899.5-201ENST00000612475 178 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC118273.1-201ENST00000525324 3006 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 RNU1-70P-201ENST00000362618 164 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 RNA5SP502-201ENST00000362694 119 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 RPS4XP2-201ENST00000458402 793 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC105918.1-201ENST00000474399 838 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 RN7SKP18-201ENST00000516005 275 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC124856.1-201ENST00000600819 896 ntBASIC1.09□□□□□ -2.24
SYNE1Q8NF91 AC017007.4-201ENST00000503353 1352 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC018555.1-201ENST00000567548 1980 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 NANOGP6-201ENST00000429190 847 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC091544.4-201ENST00000555268 342 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC100793.4-201ENST00000613683 429 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL359715.5-201ENST00000623431 443 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC007342.7-201ENST00000624610 2337 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MIR449A-201ENST00000362113 91 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 Y_RNA.466-201ENST00000384294 113 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 SRIP2-201ENST00000428470 166 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC005326.1-201ENST00000429197 123 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 ATP5HP2-201ENST00000433885 485 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 YWHAQP9-201ENST00000445891 512 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 STMN1P2-201ENST00000508435 439 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 OR5M7P-201ENST00000526140 972 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 UBE2NP1-201ENST00000545592 458 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 CSNK1A1P1-202ENST00000563423 981 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC107993.1-201ENST00000591343 684 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL450326.2-201ENST00000421913 1962 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 HMGB1P18-201ENST00000438801 619 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 RAB28P3-201ENST00000448325 597 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 RNU7-170P-201ENST00000459303 61 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 COX6B1P6-201ENST00000522347 255 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL137072.1-201ENST00000603444 466 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 USP33-201ENST00000357428 4155 ntTSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 RNA5SP374-201ENST00000362939 125 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 DPY19L1P2-201ENST00000426647 915 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 RPL21P11-201ENST00000461458 483 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC037198.2-201ENST00000478845 733 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 TMED11P-201ENST00000479478 690 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC093663.1-201ENST00000497190 394 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 VWA8P1-201ENST00000510889 176 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 ATP5F1P5-201ENST00000526403 760 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC103843.2-201ENST00000530523 682 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms