Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC083899.2-201ENST00000423285 1376 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 RNA5SP22-201ENST00000365393 109 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 HDGFP1-201ENST00000405943 252 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 SNORA11C-201ENST00000408532 129 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 RN7SKP167-201ENST00000411047 285 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 PDSS1P1-201ENST00000422953 1114 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 CKS1BP5-201ENST00000434172 273 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AL356276.2-201ENST00000435919 558 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 HMGB3P30-201ENST00000457863 606 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC146507.1-201ENST00000468335 354 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 RPL7P49-201ENST00000471402 708 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC108145.1-201ENST00000503770 153 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC008885.2-201ENST00000509506 930 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 FTH1P21-201ENST00000512179 511 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC093755.1-201ENST00000512950 1023 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC112230.1-201ENST00000604342 547 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AL021368.1-201ENST00000607490 540 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AL353726.1-201ENST00000614041 1000 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AL138721.1-201ENST00000616756 179 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AL158196.1-201ENST00000616786 434 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 AC019278.1-201ENST00000623516 479 ntBASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.2□□□□□ -1.74
HDDC3Q8N4P3 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC105074.1-201ENST00000623380 3095 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC012020.1-201ENST00000624541 1728 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 RNA5SP167-201ENST00000365461 116 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 MIR525-201ENST00000384978 85 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 BTBD10P2-201ENST00000404779 676 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 MIR1179-201ENST00000408703 91 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC009237.5-201ENST00000414271 501 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AL158825.1-201ENST00000414735 521 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC008280.1-201ENST00000418851 412 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 RBMY1KP-201ENST00000423480 476 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC008280.2-201ENST00000455473 307 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 RNA5SP246-201ENST00000458909 119 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 RPL21P71-201ENST00000465598 459 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC007688.1-201ENST00000475592 759 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 GAPDHP36-201ENST00000480688 918 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 RNU6-1102P-201ENST00000516149 96 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 HSPE1P5-201ENST00000561489 272 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC022079.2-201ENST00000619739 566 ntBASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
HDDC3Q8N4P3 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 SNORA63.1-201ENST00000362493 131 ntBASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 UBTFL3-201ENST00000418934 1024 ntBASIC4.18□□□□□ -1.74
HDDC3Q8N4P3 OR2X1P-201ENST00000421144 687 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms