Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 OR4T1P-201ENST00000554933 911 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC091078.2-201ENST00000557145 559 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC093249.1-201ENST00000567049 203 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 MIR4776-2-201ENST00000580204 80 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC008638.3-201ENST00000603341 463 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC106900.2-201ENST00000604994 317 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC145423.1-201ENST00000605712 336 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC104237.2-201ENST00000612456 443 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC241377.1-201ENST00000619797 406 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC024884.1-201ENST00000620583 399 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 C2orf27A-204ENST00000623058 969 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC018628.1-201ENST00000624147 3819 ntBASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.61□□□□□ -1.51
UBE3DQ7Z6J8 AL118496.1-201ENST00000440201 1812 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC016745.2-201ENST00000608834 3443 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 OR4G1P-203ENST00000641984 1631 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 Z95114.1-201ENST00000624264 14574 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 MTND4P35-201ENST00000604257 1375 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 ZNF652P1-201ENST00000442420 1309 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 RNU6-853P-201ENST00000364306 107 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 SNORA4.3-201ENST00000365564 137 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 RNU2-22P-201ENST00000411266 212 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 GSTM3P2-201ENST00000412746 530 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC004987.3-201ENST00000413879 771 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC127526.1-201ENST00000417526 366 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 RPL24P2-201ENST00000421023 475 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 BX284632.2-201ENST00000421091 399 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC073410.1-201ENST00000435125 589 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 HMGB1P18-201ENST00000438801 619 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AL049734.2-201ENST00000441066 616 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 Z80107.2-201ENST00000445127 392 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AL359955.2-201ENST00000445380 353 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 SNORD19B-201ENST00000459623 84 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 RN7SKP13-201ENST00000515933 244 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 RNA5SP438-201ENST00000516561 112 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC078899.1-201ENST00000521432 1185 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC107953.1-201ENST00000522216 297 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AP003396.4-201ENST00000527574 265 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 MIR4742-201ENST00000581069 85 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 MIR4271-201ENST00000582451 67 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AL022345.1-201ENST00000607292 135 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 MIR6793-201ENST00000612376 63 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC009318.4-201ENST00000620496 486 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC090617.10-201ENST00000624308 134 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC092125.1-201ENST00000562568 1995 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 AC006020.1-201ENST00000420179 1854 ntBASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.6□□□□□ -1.51
UBE3DQ7Z6J8 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 241.8 ms