Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.49□□□□□ -1.53
RNF4P78317 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.49□□□□□ -1.53
RNF4P78317 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 AC092121.1-201ENST00000569452 202 ntBASIC5.49□□□□□ -1.53
RNF4P78317 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.49□□□□□ -1.53
RNF4P78317 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 MIR3118-1-201ENST00000581787 76 ntBASIC5.49□□□□□ -1.53
RNF4P78317 Z84480.1-201ENST00000605131 311 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AC145423.1-201ENST00000605712 336 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AL050343.2-201ENST00000607338 280 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AC015982.1-201ENST00000608113 465 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AL132765.2-201ENST00000610812 351 ntBASIC5.49□□□□□ -1.53
RNF4P78317 PART1_1.1-201ENST00000611761 217 ntBASIC5.49□□□□□ -1.53
RNF4P78317 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.49□□□□□ -1.53
RNF4P78317 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 AL162377.2-201ENST00000624532 337 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AC100810.6-201ENST00000638068 285 ntBASIC5.49□□□□□ -1.53
RNF4P78317 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.49□□□□□ -1.53
RNF4P78317 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 AL161756.3-201ENST00000641216 2071 ntBASIC5.49□□□□□ -1.53
RNF4P78317 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.48□□□□□ -1.53
RNF4P78317 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.48□□□□□ -1.53
RNF4P78317 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 MFSD8-219ENST00000641228 2559 ntBASIC5.48□□□□□ -1.53
RNF4P78317 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 HSPD1P8-201ENST00000400121 1658 ntBASIC5.48□□□□□ -1.53
RNF4P78317 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
RNF4P78317 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.48□□□□□ -1.53
RNF4P78317 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.48□□□□□ -1.53
RNF4P78317 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
RNF4P78317 MIR133A2-201ENST00000347538 102 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RNU4-79P-201ENST00000362764 141 ntBASIC5.48□□□□□ -1.53
RNF4P78317 Y_RNA.58-201ENST00000362807 102 ntBASIC5.48□□□□□ -1.53
RNF4P78317 Y_RNA.154-201ENST00000363624 102 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RNU4-1-201ENST00000363925 141 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RN7SKP15-201ENST00000364742 309 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RNY3P1-201ENST00000365085 102 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RNY3-201ENST00000365484 102 ntBASIC5.48□□□□□ -1.53
RNF4P78317 Y_RNA.490-201ENST00000384413 102 ntBASIC5.48□□□□□ -1.53
RNF4P78317 AL121835.1-201ENST00000404250 354 ntBASIC5.48□□□□□ -1.53
RNF4P78317 AL354751.2-201ENST00000415471 210 ntBASIC5.48□□□□□ -1.53
RNF4P78317 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.48□□□□□ -1.53
RNF4P78317 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.48□□□□□ -1.53
RNF4P78317 AC119618.1-201ENST00000434191 222 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RPL23AP74-201ENST00000437246 471 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RPS15AP9-201ENST00000439856 381 ntBASIC5.48□□□□□ -1.53
RNF4P78317 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.48□□□□□ -1.53
RNF4P78317 AL663074.2-201ENST00000440621 479 ntBASIC5.48□□□□□ -1.53
RNF4P78317 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.48□□□□□ -1.53
RNF4P78317 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.48□□□□□ -1.53
RNF4P78317 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.48□□□□□ -1.53
RNF4P78317 AC006511.1-201ENST00000470614 315 ntBASIC5.48□□□□□ -1.53
RNF4P78317 PFN1P6-201ENST00000476786 399 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RN7SL57P-201ENST00000493687 290 ntBASIC5.48□□□□□ -1.53
RNF4P78317 AC117522.3-201ENST00000507974 584 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RNA5SP401-201ENST00000515920 127 ntBASIC5.48□□□□□ -1.53
RNF4P78317 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.48□□□□□ -1.53
RNF4P78317 FTH1P11-201ENST00000517577 551 ntBASIC5.48□□□□□ -1.53
RNF4P78317 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.48□□□□□ -1.53
RNF4P78317 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.48□□□□□ -1.53
RNF4P78317 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.48□□□□□ -1.53
RNF4P78317 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.48□□□□□ -1.53
RNF4P78317 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC5.48□□□□□ -1.53
RNF4P78317 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.48□□□□□ -1.53
RNF4P78317 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.48□□□□□ -1.53
RNF4P78317 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.48□□□□□ -1.53
RNF4P78317 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC5.48□□□□□ -1.53
RNF4P78317 MTCO3P13-201ENST00000577757 781 ntBASIC5.48□□□□□ -1.53
RNF4P78317 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC5.48□□□□□ -1.53
RNF4P78317 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC5.48□□□□□ -1.53
RNF4P78317 AC013553.2-201ENST00000604244 589 ntBASIC5.48□□□□□ -1.53
RNF4P78317 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 AL139099.4-201ENST00000614802 114 ntBASIC5.48□□□□□ -1.53
RNF4P78317 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 AC009161.2-201ENST00000624626 138 ntBASIC5.48□□□□□ -1.53
RNF4P78317 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.48□□□□□ -1.53
RNF4P78317 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.48□□□□□ -1.53
RNF4P78317 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.48□□□□□ -1.53
RNF4P78317 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.48□□□□□ -1.53
RNF4P78317 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
RNF4P78317 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
RNF4P78317 AC004158.1-201ENST00000564508 4319 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms