Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA3P55318 XKRYP5-201ENST00000449659 483 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.67□□□□□ -1.98
FOXA3P55318 HMGN1P18-201ENST00000457642 277 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 RN7SL594P-201ENST00000470590 287 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AC006511.1-201ENST00000470614 315 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC2.67□□□□□ -1.98
FOXA3P55318 AP000563.1-201ENST00000490865 758 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC2.67□□□□□ -1.98
FOXA3P55318 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA3P55318 AC114967.1-201ENST00000504890 259 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC2.67□□□□□ -1.98
FOXA3P55318 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXA3P55318 MIR2276-201ENST00000516886 89 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AC068657.1-201ENST00000520807 306 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXA3P55318 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC2.67□□□□□ -1.98
FOXA3P55318 OR7E13P-201ENST00000526052 910 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA3P55318 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXA3P55318 ARF4P1-201ENST00000605447 541 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AL365400.2-201ENST00000605604 902 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXA3P55318 AC019193.2-201ENST00000610012 634 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 uc_338.9-201ENST00000617424 182 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AC092184.1-201ENST00000625042 715 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXA3P55318 AP000553.6-201ENST00000641242 118 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXA3P55318 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
FOXA3P55318 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXA3P55318 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.66□□□□□ -1.98
FOXA3P55318 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXA3P55318 CD36-221ENST00000534394 1741 ntTSL 2 BASIC2.66□□□□□ -1.98
FOXA3P55318 ACEA_U3.1-201ENST00000363057 217 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXA3P55318 AC126124.2-201ENST00000413542 321 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA3P55318 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC2.66□□□□□ -1.98
FOXA3P55318 AC023141.6-201ENST00000429418 337 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 CYCSP53-201ENST00000455540 265 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC2.66□□□□□ -1.98
FOXA3P55318 AC023598.1-201ENST00000472521 361 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 SNORA64.4-201ENST00000516632 81 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA3P55318 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA3P55318 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA3P55318 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA3P55318 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA3P55318 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA3P55318 AC010198.2-201ENST00000550612 259 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC2.66□□□□□ -1.98
FOXA3P55318 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA3P55318 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.66□□□□□ -1.98
FOXA3P55318 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC2.66□□□□□ -1.98
FOXA3P55318 AC015726.1-201ENST00000602353 681 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 AC011468.4-201ENST00000603942 409 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 AC006077.1-201ENST00000604746 343 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 AL021707.7-201ENST00000607991 416 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.66□□□□□ -1.98
FOXA3P55318 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXA3P55318 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXA3P55318 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
FOXA3P55318 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.66□□□□□ -1.98
FOXA3P55318 RNF6P1-201ENST00000444889 1784 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXA3P55318 AC007256.1-201ENST00000392253 2765 ntBASIC2.66□□□□□ -1.98
FOXA3P55318 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXA3P55318 MFSD8-233ENST00000641482 4860 ntBASIC2.65□□□□□ -1.98
FOXA3P55318 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
FOXA3P55318 SRP72P2-201ENST00000344851 1979 ntBASIC2.65□□□□□ -1.98
FOXA3P55318 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
FOXA3P55318 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
FOXA3P55318 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
FOXA3P55318 CCNB2P1-201ENST00000399411 1150 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 SNORA3.3-201ENST00000408712 125 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 OR8G2P-201ENST00000412796 908 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 AC007394.1-201ENST00000421941 531 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 AL513174.1-201ENST00000423182 629 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC2.65□□□□□ -1.99
FOXA3P55318 AC105402.2-201ENST00000438503 358 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 ISCA1P2-201ENST00000438679 421 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 RNF148-202ENST00000447240 839 ntTSL 2 BASIC2.65□□□□□ -1.99
FOXA3P55318 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA3P55318 AC010655.1-201ENST00000449336 292 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA3P55318 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA3P55318 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA3P55318 RN7SL610P-201ENST00000463845 291 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA3P55318 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.65□□□□□ -1.99
FOXA3P55318 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA3P55318 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA3P55318 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA3P55318 AP003730.1-201ENST00000524605 285 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA3P55318 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
FOXA3P55318 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC2.65□□□□□ -1.99
FOXA3P55318 OR4T1P-201ENST00000554933 911 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms