Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 RPS20P4-201ENST00000461659 355 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 LARP1BP2-201ENST00000486594 519 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC013701.1-201ENST00000522657 465 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AL049872.1-201ENST00000556323 322 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 MRPS21P7-201ENST00000566937 238 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AL139286.1-201ENST00000604465 483 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AL132765.2-201ENST00000610812 351 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC136475.10-201ENST00000620253 385 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC006065.6-201ENST00000625201 545 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC007342.7-201ENST00000624610 2337 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC132825.1-201ENST00000463573 2247 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC6.21□□□□□ -1.41
CCDC39Q9UFE4 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC6.21□□□□□ -1.41
CCDC39Q9UFE4 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC39Q9UFE4 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC6.21□□□□□ -1.41
CCDC39Q9UFE4 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC39Q9UFE4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 RNA5SP46-201ENST00000362370 120 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 SNORD56.2-201ENST00000363242 71 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 RNU6-31P-201ENST00000384388 108 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 MIR137-201ENST00000385223 102 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC009310.1-201ENST00000414414 451 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC092647.1-201ENST00000420654 287 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 RPL7P44-201ENST00000424827 742 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 IPO7P1-201ENST00000442031 636 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 BX842559.2-201ENST00000451418 605 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC105914.1-201ENST00000511798 226 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 SNORD46.2-201ENST00000516021 102 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 Y_RNA.704-201ENST00000516851 102 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 RNU6-430P-201ENST00000517078 107 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC078814.3-201ENST00000553036 491 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 RBM22P12-201ENST00000567098 1255 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC024560.3-201ENST00000608482 349 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC008115.3-201ENST00000614874 549 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 MIR1910-201ENST00000636955 80 ntBASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC6.21□□□□□ -1.42
CCDC39Q9UFE4 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 HSPA8P17-201ENST00000427029 1382 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 RNA5SP510-201ENST00000364697 99 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 RNU4-2-201ENST00000365668 141 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 SNORA75.4-201ENST00000391278 119 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 RN7SKP58-201ENST00000411010 305 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms