Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5□□□□□ -1.61
DKK3Q9UBP4 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5□□□□□ -1.61
DKK3Q9UBP4 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC092104.1-201ENST00000497346 1441 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC093536.2-201ENST00000565257 1406 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 Y_RNA.559-201ENST00000384686 107 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 MIR16-1-201ENST00000385271 89 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 SNORD65.1-201ENST00000390889 71 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC048351.1-201ENST00000420064 602 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AL022400.1-201ENST00000423946 935 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 DPRXP1-201ENST00000426312 460 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AL009174.1-201ENST00000426577 416 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC104837.2-201ENST00000427236 424 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC007559.1-201ENST00000428736 355 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 OR52J1P-201ENST00000450596 932 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 USP9YP10-201ENST00000454868 628 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 PNPLA4P1-201ENST00000458328 305 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC147055.4-201ENST00000504399 745 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC010424.1-201ENST00000506336 297 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 MTATP6P22-201ENST00000507369 598 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 USP9YP5-201ENST00000511770 630 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 RNU6-678P-201ENST00000516832 109 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 MTND1P5-201ENST00000517906 940 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 HIGD1AP10-201ENST00000527837 282 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC006349.1-201ENST00000555526 235 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC009117.1-201ENST00000563948 554 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 OR4K7P-201ENST00000580232 945 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AP000254.1-201ENST00000609934 520 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AL359740.1-201ENST00000624340 592 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AP003072.4-201ENST00000624580 310 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 AC092184.1-201ENST00000625042 715 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
DKK3Q9UBP4 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 MTND5P29-201ENST00000458676 1807 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 NCLP2-201ENST00000416078 1462 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 ZNF833P-201ENST00000424938 1494 ntBASIC4.99□□□□□ -1.61
DKK3Q9UBP4 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC011477.1-204ENST00000623416 1325 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC099654.2-201ENST00000433031 1980 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 HMGB1P5-201ENST00000255320 642 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 RNU6-621P-201ENST00000364752 109 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 RNA5SP87-201ENST00000384155 118 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 NPM1P11-201ENST00000417106 855 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC006366.1-201ENST00000422002 759 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 C4BPAP2-201ENST00000428434 478 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AL590103.1-201ENST00000434488 307 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC093414.1-201ENST00000434712 514 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 MTND4P6-201ENST00000438297 472 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 CYCSP24-201ENST00000445119 316 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AL691482.1-201ENST00000453255 87 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC092324.1-201ENST00000468671 324 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 SETP11-201ENST00000473027 690 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC107401.1-201ENST00000503426 685 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms