Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AF001550.2-201ENST00000636643 217 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
NKX3-1Q99801 MTND4P8-201ENST00000514997 1362 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
NKX3-1Q99801 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.84□□□□□ -1.8
NKX3-1Q99801 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
NKX3-1Q99801 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
NKX3-1Q99801 AP005901.5-201ENST00000545779 1796 ntBASIC3.84□□□□□ -1.8
NKX3-1Q99801 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 RNA5SP52-201ENST00000362448 134 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 ERHP2-201ENST00000402323 299 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 RPL31-204ENST00000409038 817 ntTSL 2 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 MIR1911-201ENST00000410783 80 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 RN7SKP100-201ENST00000411258 284 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AL590139.1-201ENST00000416267 400 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 Z75741.2-201ENST00000417272 1167 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 EIF4EP1-201ENST00000422311 642 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC245028.1-201ENST00000423259 256 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 RPF2P1-201ENST00000424137 906 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 DNAJC19P7-201ENST00000428811 344 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 MTATP6P17-201ENST00000431030 672 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC016831.4-201ENST00000438302 307 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 RPL36AP15-201ENST00000444514 266 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 PTENP1-201ENST00000447117 1215 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 Z73417.1-201ENST00000447373 778 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 RPL23AP15-201ENST00000450202 459 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC079776.3-201ENST00000450665 370 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 IFNWP4-201ENST00000453148 294 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 PPIAP21-201ENST00000464473 501 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 RPL30P11-201ENST00000495304 339 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC091951.3-201ENST00000504093 246 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 PPBPP1-201ENST00000510807 373 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 VWA8P1-201ENST00000510889 176 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 NDUFB4P12-201ENST00000513465 390 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 RNU6-202P-201ENST00000515998 96 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 RAB9BP1-201ENST00000519581 626 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 HIGD1AP6-201ENST00000521833 279 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 MTND6P33-201ENST00000571794 183 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC068790.7-201ENST00000602347 528 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC091057.2-201ENST00000602594 792 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC113368.1-201ENST00000603736 382 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC099676.1-201ENST00000608886 657 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 NAA60-237ENST00000615865 326 ntTSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC109454.4-201ENST00000623411 649 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC067931.1-201ENST00000624190 671 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 OR1S1-201ENST00000624470 978 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 KARSP3-201ENST00000571212 1504 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 AC114546.3-201ENST00000623582 1734 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 CPHL1P-201ENST00000461341 3407 ntBASIC3.83□□□□□ -1.8
NKX3-1Q99801 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
NKX3-1Q99801 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
NKX3-1Q99801 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 RNA5SP391-201ENST00000363456 119 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 SNORA51.12-201ENST00000384448 134 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 MIR217-201ENST00000384817 110 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 MIR708-201ENST00000390708 88 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 RPS4XP9-201ENST00000405151 780 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms