Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 AL162574.2-201ENST00000614618 657 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC018926.3-201ENST00000618841 406 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 AP006248.3-201ENST00000623580 594 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC018555.1-201ENST00000567548 1980 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS39Q96JC1 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS39Q96JC1 IQCB2P-201ENST00000401788 1633 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS39Q96JC1 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS39Q96JC1 SNORD35B-201ENST00000363660 87 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 UBE2V1P1-201ENST00000430836 445 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 COX6B1P7-201ENST00000430845 235 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC005189.1-201ENST00000431286 310 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 BTF3P10-201ENST00000433415 495 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 RPL7P28-201ENST00000437739 740 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 CBX1P1-201ENST00000440184 427 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 VN1R25P-201ENST00000443385 738 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 RPL23AP15-201ENST00000450202 459 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 VN1R40P-201ENST00000455196 941 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC008280.2-201ENST00000455473 307 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 CEACAMP4-201ENST00000457676 421 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC006463.2-201ENST00000473326 348 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC108729.2-201ENST00000476543 840 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC041039.1-201ENST00000485656 536 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC093840.1-201ENST00000511599 336 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 MTND1P6-201ENST00000523621 946 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC009643.1-201ENST00000532030 391 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 GNRHR2P1-201ENST00000555315 631 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC008745.1-201ENST00000604064 271 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AP000255.1-201ENST00000610276 676 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC012531.5-201ENST00000611375 151 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 MIR7641-1-201ENST00000627518 61 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 AC017104.5-201ENST00000637647 639 ntBASIC4.07□□□□□ -1.76
VPS39Q96JC1 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS39Q96JC1 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
VPS39Q96JC1 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS39Q96JC1 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS39Q96JC1 MTCO1P18-201ENST00000455518 1419 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS39Q96JC1 MAPK10-372ENST00000641954 3413 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS39Q96JC1 ENSAP3-201ENST00000312710 333 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 RNA5SP509-201ENST00000364577 119 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AL161909.1-201ENST00000397390 712 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 HSPE1P26-201ENST00000405341 275 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 HMGB3P31-201ENST00000413333 595 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 EI24P1-201ENST00000416584 867 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 AC023141.6-201ENST00000429418 337 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AL358472.1-201ENST00000431295 329 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AL513175.1-201ENST00000431492 780 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AC096638.2-201ENST00000434965 711 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AC006994.1-201ENST00000438212 839 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 UBE2V1P5-201ENST00000440070 405 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AC004865.1-201ENST00000442276 1003 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 RPL6P5-201ENST00000445678 828 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 AC011276.1-201ENST00000469688 323 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 RN7SL481P-201ENST00000477764 299 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 TRAV31-201ENST00000502780 342 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 AC016065.2-201ENST00000514530 444 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS39Q96JC1 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS39Q96JC1 MIR4284-201ENST00000578924 81 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 MIR5684-201ENST00000585074 65 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 EIF1P6-201ENST00000600054 334 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 HMGN2P28-201ENST00000606102 262 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AP003392.5-201ENST00000607857 415 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms