Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 RNU6-1261P-201ENST00000517194 104 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC027309.2-201ENST00000520566 192 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC068831.4-201ENST00000556118 109 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 MIR3939-201ENST00000582614 106 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC103792.1-201ENST00000603591 919 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AL592221.1-201ENST00000605266 382 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 MIR6716-201ENST00000613413 80 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AP000676.3-201ENST00000623299 569 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC103706.2-201ENST00000638080 240 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 SGO1P2-201ENST00000429458 1589 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AC012321.1-201ENST00000561622 1588 ntBASIC4.72□□□□□ -1.65
HMGB4Q8WW32 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGB4Q8WW32 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
HMGB4Q8WW32 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
HMGB4Q8WW32 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.71□□□□□ -1.65
HMGB4Q8WW32 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
HMGB4Q8WW32 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 OR14L1P-202ENST00000641545 3009 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 SOCS5P3-201ENST00000425115 1576 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 MTND5P31-201ENST00000419366 1374 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 Y_RNA.126-201ENST00000363382 111 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 Y_RNA.311-201ENST00000365068 96 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 RNU6-1293P-201ENST00000384077 107 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 RNU5A-2P-201ENST00000384337 116 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 RN7SKP16-201ENST00000410180 299 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC068533.2-201ENST00000411872 306 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 MTCO3P1-205ENST00000422088 832 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC011233.1-201ENST00000422812 283 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 B3GNT2P1-201ENST00000434960 952 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 RPL12P46-201ENST00000436610 195 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 MTND5P2-201ENST00000442927 1142 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 MTND2P22-201ENST00000444325 1033 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AL109741.2-201ENST00000455561 343 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 RPL23AP24-201ENST00000458203 385 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 MTND1P16-201ENST00000465177 898 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 CCDC75P1-201ENST00000469247 791 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 RPL36AP41-201ENST00000493820 306 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC015795.1-201ENST00000513669 327 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC118465.1-201ENST00000513820 1271 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 ARL2BPP5-201ENST00000523141 481 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC008015.1-201ENST00000555505 465 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC105129.1-201ENST00000560250 297 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AP005262.1-201ENST00000582646 997 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC013444.2-201ENST00000603317 787 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 RNU6-156P-201ENST00000621869 107 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AL603750.1-201ENST00000624216 1717 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 ZNF542P-204ENST00000482727 1305 ntBASIC4.71□□□□□ -1.66
HMGB4Q8WW32 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB4Q8WW32 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.7□□□□□ -1.66
HMGB4Q8WW32 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.7□□□□□ -1.66
HMGB4Q8WW32 AC091046.3-201ENST00000631455 1574 ntBASIC4.7□□□□□ -1.66
HMGB4Q8WW32 AL731566.1-201ENST00000620490 1937 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms