Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ELOCP16-201ENST00000444494 332 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC239367.2-201ENST00000447309 705 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 ZNF886P-201ENST00000450781 723 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 ZNF736P8Y-201ENST00000451913 669 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 NPM1P13-201ENST00000452663 865 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 PTGES3P5-201ENST00000455109 434 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 FAM133DP-201ENST00000464802 691 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 MTCO3P35-201ENST00000485582 781 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 MTCO3P15-201ENST00000526563 574 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 MTND4LP24-201ENST00000572277 291 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 MTATP6P24-201ENST00000576835 677 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AL161729.3-201ENST00000603533 673 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AL354984.3-201ENST00000604803 325 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC009237.15-201ENST00000610252 501 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AL353726.1-201ENST00000614041 1000 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC010975.3-201ENST00000618727 978 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 FP325313.1-201ENST00000638228 703 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC006927.4-201ENST00000639187 543 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 ZNF663P-202ENST00000641770 1131 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC009229.4-201ENST00000623854 1947 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC099786.3-201ENST00000565735 1410 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP41Q3LFD5 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP41Q3LFD5 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP41Q3LFD5 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USP41Q3LFD5 RNA5SP307-201ENST00000362863 116 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP41Q3LFD5 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP41Q3LFD5 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AL583835.1-201ENST00000399570 407 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 RNA5SP36-201ENST00000410197 133 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 RNU4-22P-201ENST00000411058 166 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 RNU6-603P-201ENST00000411403 107 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 HIGD1AP12-201ENST00000427832 281 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AL353597.2-202ENST00000434901 373 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 HMGB3P9-201ENST00000441799 583 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 VN1R25P-201ENST00000443385 738 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 HMGB3P6-201ENST00000444896 598 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 PTMAP3-201ENST00000447474 330 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC069528.1-202ENST00000482888 637 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC134050.1-201ENST00000495088 933 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 RNU6-311P-201ENST00000516224 102 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 RNU6-416P-201ENST00000516265 103 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 RNA5SP519-201ENST00000516480 119 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 RNA5SP73-201ENST00000516744 108 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4.6□□□□□ -1.67
USP41Q3LFD5 AP002360.3-201ENST00000607673 710 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AL355816.1-201ENST00000607951 118 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC006386.1-201ENST00000619436 415 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AL161637.1-201ENST00000622380 412 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC015908.5-201ENST00000623289 343 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC006963.1-201ENST00000624003 1052 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 AC067931.1-201ENST00000624190 671 ntBASIC4.6□□□□□ -1.67
USP41Q3LFD5 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms