Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CHD3Q12873 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CHD3Q12873 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.21□□□□□ -1.9
CHD3Q12873 XIAPP3-201ENST00000312918 795 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 MIR128-1-201ENST00000384921 82 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 AC007066.1-201ENST00000392902 381 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 RN7SKP56-201ENST00000410513 331 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.2□□□□□ -1.9
CHD3Q12873 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC3.2□□□□□ -1.9
CHD3Q12873 AC017083.1-201ENST00000428093 483 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.2□□□□□ -1.9
CHD3Q12873 FTH1P9-201ENST00000513251 355 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 AC093853.1-201ENST00000515689 483 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 SUMO2P20-201ENST00000520803 283 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CHD3Q12873 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CHD3Q12873 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.2□□□□□ -1.9
CHD3Q12873 U7.8-201ENST00000619968 63 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 AC244205.2-202ENST00000635781 342 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CHD3Q12873 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CHD3Q12873 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CHD3Q12873 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.2□□□□□ -1.9
CHD3Q12873 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CHD3Q12873 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
CHD3Q12873 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
CHD3Q12873 SNORD6-201ENST00000365444 73 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 MIR199A2-201ENST00000385289 110 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 RPL21P23-201ENST00000446654 460 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 AP001486.1-201ENST00000463339 476 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 BTF3L4P4-201ENST00000506381 449 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.2□□□□□ -1.9
CHD3Q12873 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.2□□□□□ -1.9
CHD3Q12873 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.2□□□□□ -1.9
CHD3Q12873 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.2□□□□□ -1.9
CHD3Q12873 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.2□□□□□ -1.9
CHD3Q12873 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.2□□□□□ -1.9
CHD3Q12873 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.2□□□□□ -1.9
CHD3Q12873 AC006946.3-201ENST00000609791 756 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 AL139089.1-201ENST00000620372 975 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.2□□□□□ -1.9
CHD3Q12873 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.2□□□□□ -1.9
CHD3Q12873 ATE1-AS1-202ENST00000636460 506 ntBASIC3.2□□□□□ -1.9
CHD3Q12873 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CHD3Q12873 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.2□□□□□ -1.9
CHD3Q12873 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CHD3Q12873 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CHD3Q12873 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHD3Q12873 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CHD3Q12873 MTCO3P31-201ENST00000405526 789 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.19□□□□□ -1.9
CHD3Q12873 AL158156.1-201ENST00000422509 473 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.19□□□□□ -1.9
CHD3Q12873 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.19□□□□□ -1.9
CHD3Q12873 AC092809.1-201ENST00000441469 474 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 AL136126.1-201ENST00000473603 402 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 AC069499.1-201ENST00000489433 509 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 AP000563.1-201ENST00000490865 758 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.19□□□□□ -1.9
CHD3Q12873 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC3.19□□□□□ -1.9
CHD3Q12873 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.19□□□□□ -1.9
CHD3Q12873 OR4A12P-201ENST00000530847 918 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC3.19□□□□□ -1.9
CHD3Q12873 AC012493.2-201ENST00000595083 291 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 AC005972.3-201ENST00000606304 481 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 AC091905.1-201ENST00000624400 311 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.19□□□□□ -1.9
CHD3Q12873 AL392088.2-201ENST00000637607 285 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 AL451142.2-201ENST00000429076 2090 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHD3Q12873 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHD3Q12873 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHD3Q12873 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
CHD3Q12873 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.19□□□□□ -1.9
CHD3Q12873 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC3.19□□□□□ -1.9
CHD3Q12873 AC245054.1-201ENST00000420944 258 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 OR6K4P-201ENST00000423179 955 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHD3Q12873 AL591503.2-201ENST00000442314 1005 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.19□□□□□ -1.9
CHD3Q12873 OR5B10P-201ENST00000532869 642 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.19□□□□□ -1.9
CHD3Q12873 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.19□□□□□ -1.9
CHD3Q12873 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHD3Q12873 MRPS35P3-201ENST00000603189 709 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHD3Q12873 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHD3Q12873 MIR8057-201ENST00000620957 69 ntBASIC3.19□□□□□ -1.9
CHD3Q12873 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHD3Q12873 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
CHD3Q12873 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
CHD3Q12873 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHD3Q12873 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC3.18□□□□□ -1.9
CHD3Q12873 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHD3Q12873 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.18□□□□□ -1.9
CHD3Q12873 AC010740.1-201ENST00000417035 684 ntBASIC3.18□□□□□ -1.9
CHD3Q12873 RN7SL601P-201ENST00000471221 293 ntBASIC3.18□□□□□ -1.9
CHD3Q12873 RAC1P2-201ENST00000511164 579 ntBASIC3.18□□□□□ -1.9
CHD3Q12873 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms