Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.33□□□□□ -1.88
FOXA1P55317 AL513174.1-201ENST00000423182 629 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 RPL23AP82-202ENST00000427528 469 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA1P55317 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA1P55317 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 NOTCH2P1-201ENST00000443481 624 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA1P55317 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 AL133244.1-201ENST00000456007 258 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 CENPBD1P1-201ENST00000464061 469 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 SEPT7P6-201ENST00000469999 1143 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 TRBV8-2-201ENST00000475637 270 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 CDH12P2-201ENST00000504393 298 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA1P55317 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA1P55317 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA1P55317 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.33□□□□□ -1.88
FOXA1P55317 CBX3P5-201ENST00000552017 521 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.33□□□□□ -1.88
FOXA1P55317 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA1P55317 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 MIR4644-201ENST00000579929 84 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.33□□□□□ -1.88
FOXA1P55317 VN1R79P-201ENST00000593540 513 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 AC110801.1-201ENST00000623590 212 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 HSPA8P17-201ENST00000427029 1382 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 AC007342.7-201ENST00000624610 2337 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA1P55317 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA1P55317 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA1P55317 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 AC011155.1-201ENST00000316512 456 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 RNU1-64P-201ENST00000365443 163 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AC025750.1-201ENST00000399891 379 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 RPS7P13-201ENST00000413955 498 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 LIPT1P1-201ENST00000415870 1186 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AL356968.1-201ENST00000416622 474 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXA1P55317 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA1P55317 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA1P55317 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXA1P55317 AC022431.1-201ENST00000450941 438 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AC097262.1-201ENST00000452559 548 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 IFNWP4-201ENST00000453148 294 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AC087312.1-201ENST00000471411 480 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AC007688.1-201ENST00000475592 759 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXA1P55317 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXA1P55317 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXA1P55317 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA1P55317 MED28P5-201ENST00000528254 438 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXA1P55317 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA1P55317 AC006116.10-201ENST00000591836 581 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AC020914.6-201ENST00000594327 272 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AC010591.1-201ENST00000603941 649 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AL391497.1-201ENST00000608671 547 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA1P55317 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
FOXA1P55317 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 AL445437.1-201ENST00000623157 3087 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 MFSD8-233ENST00000641482 4860 ntBASIC3.32□□□□□ -1.88
FOXA1P55317 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
FOXA1P55317 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA1P55317 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA1P55317 PHKBP1-201ENST00000450951 1951 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 AL645937.1-201ENST00000641739 1652 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA1P55317 RNA5SP197-201ENST00000363357 119 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 RNU1-87P-201ENST00000363727 170 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA1P55317 MIR134-201ENST00000385258 73 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 RPL21P17-201ENST00000397467 475 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 RSL24D1P1-201ENST00000404972 493 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA1P55317 AL445584.1-201ENST00000431451 330 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA1P55317 RPL6P9-201ENST00000466502 859 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 AC018635.1-201ENST00000468292 1030 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 CYCSP20-201ENST00000473154 315 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 RN7SL442P-201ENST00000473804 320 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 AC068305.1-201ENST00000497406 726 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 HMGN1P11-201ENST00000508668 303 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXA1P55317 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA1P55317 AC107934.2-201ENST00000518653 310 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 AC091515.1-201ENST00000548110 679 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms