Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
COL5A1P20908 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.39□□□□□ -1.87
COL5A1P20908 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
COL5A1P20908 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
COL5A1P20908 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A1P20908 FAM35DP-201ENST00000323387 2712 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.38□□□□□ -1.87
COL5A1P20908 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.38□□□□□ -1.87
COL5A1P20908 AC093010.3-201ENST00000570269 15214 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A1P20908 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
COL5A1P20908 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A1P20908 UBE2V1P1-201ENST00000430836 445 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.38□□□□□ -1.87
COL5A1P20908 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC3.38□□□□□ -1.87
COL5A1P20908 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.38□□□□□ -1.87
COL5A1P20908 U3.44-201ENST00000458938 192 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 NPM1P17-201ENST00000479221 602 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 AC008489.1-201ENST00000524271 483 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 AL606834.2-201ENST00000602954 668 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 HMGB1P50-201ENST00000605814 607 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A1P20908 SCN1A-220ENST00000641603 12506 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A1P20908 AC116096.1-201ENST00000566804 2314 ntBASIC3.38□□□□□ -1.87
COL5A1P20908 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
COL5A1P20908 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC3.38□□□□□ -1.87
COL5A1P20908 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A1P20908 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A1P20908 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A1P20908 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC3.38□□□□□ -1.87
COL5A1P20908 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.38□□□□□ -1.87
COL5A1P20908 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL5A1P20908 FRG1CP-201ENST00000358464 769 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.37□□□□□ -1.87
COL5A1P20908 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 NANOGNBP1-201ENST00000448444 480 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 CCRL1P1-201ENST00000449542 1053 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 RPL26P28-201ENST00000451325 435 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.37□□□□□ -1.87
COL5A1P20908 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.37□□□□□ -1.87
COL5A1P20908 FCF1P3-201ENST00000496394 590 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.37□□□□□ -1.87
COL5A1P20908 AC118465.1-201ENST00000513820 1271 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 RFPL4AP5-201ENST00000514977 504 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.37□□□□□ -1.87
COL5A1P20908 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.37□□□□□ -1.87
COL5A1P20908 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.37□□□□□ -1.87
COL5A1P20908 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.37□□□□□ -1.87
COL5A1P20908 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.37□□□□□ -1.87
COL5A1P20908 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.37□□□□□ -1.87
COL5A1P20908 AC104763.2-201ENST00000604179 382 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC073657.2-201ENST00000605661 303 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 LINC00901.1-201ENST00000617252 152 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC026422.1-201ENST00000623961 452 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.37□□□□□ -1.87
COL5A1P20908 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
COL5A1P20908 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.37□□□□□ -1.87
COL5A1P20908 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.37□□□□□ -1.87
COL5A1P20908 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.37□□□□□ -1.87
COL5A1P20908 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
COL5A1P20908 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 AL357075.1-201ENST00000404107 726 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A1P20908 AC004552.1-201ENST00000419089 348 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 RN7SL93P-201ENST00000463035 293 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 RPS26P3-201ENST00000470205 348 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC090543.2-201ENST00000483963 348 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC004057.1-201ENST00000485827 348 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.37□□□□□ -1.87
COL5A1P20908 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.37□□□□□ -1.87
COL5A1P20908 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.37□□□□□ -1.87
COL5A1P20908 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.37□□□□□ -1.87
COL5A1P20908 AL121594.4-201ENST00000556211 1196 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.37□□□□□ -1.87
COL5A1P20908 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.37□□□□□ -1.87
COL5A1P20908 AC127502.3-201ENST00000636170 1206 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC018529.3-201ENST00000624212 2254 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 AC093908.1-201ENST00000623125 8092 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 MTCO1P24-201ENST00000515438 1558 ntBASIC3.37□□□□□ -1.87
COL5A1P20908 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.37□□□□□ -1.87
COL5A1P20908 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.36□□□□□ -1.87
COL5A1P20908 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL5A1P20908 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC3.36□□□□□ -1.87
COL5A1P20908 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL5A1P20908 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL5A1P20908 AC092435.3-201ENST00000565538 3654 ntBASIC3.36□□□□□ -1.87
COL5A1P20908 ZNF807-201ENST00000328088 1707 ntBASIC3.36□□□□□ -1.87
COL5A1P20908 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms