Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC4.03□□□□□ -1.76
LMX1BO60663 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC4.03□□□□□ -1.76
LMX1BO60663 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LMX1BO60663 MTND5P13-201ENST00000513046 1079 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.03□□□□□ -1.76
LMX1BO60663 AC023632.1-201ENST00000518463 375 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 RPL12P22-201ENST00000519073 490 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.03□□□□□ -1.76
LMX1BO60663 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.03□□□□□ -1.76
LMX1BO60663 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.03□□□□□ -1.76
LMX1BO60663 AC023161.2-201ENST00000551218 780 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.03□□□□□ -1.76
LMX1BO60663 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC4.03□□□□□ -1.76
LMX1BO60663 AC044913.1-201ENST00000557200 430 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC007599.1-201ENST00000568688 1174 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.03□□□□□ -1.76
LMX1BO60663 MIR3912-201ENST00000577566 105 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.03□□□□□ -1.76
LMX1BO60663 MIR3915-201ENST00000578518 97 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.03□□□□□ -1.76
LMX1BO60663 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.03□□□□□ -1.76
LMX1BO60663 AP000238.1-201ENST00000608759 426 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC122133.1-201ENST00000613964 233 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AL356274.1-201ENST00000617064 410 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AP001005.3-201ENST00000622049 129 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC024595.1-201ENST00000623088 387 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC007342.8-201ENST00000623278 678 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC098679.5-201ENST00000624394 571 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 MIR6830-201ENST00000636015 70 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 MIR4278-201ENST00000636094 69 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC119674.1-212ENST00000641155 993 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LMX1BO60663 AL606537.1-201ENST00000607258 2011 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LMX1BO60663 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LMX1BO60663 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LMX1BO60663 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
LMX1BO60663 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.03□□□□□ -1.76
LMX1BO60663 AC092104.1-201ENST00000497346 1441 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 AC010928.1-201ENST00000592477 1447 ntBASIC4.03□□□□□ -1.76
LMX1BO60663 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LMX1BO60663 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LMX1BO60663 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LMX1BO60663 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.03□□□□□ -1.77
LMX1BO60663 AC139713.2-214ENST00000642059 1811 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.02□□□□□ -1.77
LMX1BO60663 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
LMX1BO60663 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 AL391994.1-201ENST00000254724 282 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 RNU6-98P-201ENST00000384173 107 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 VDAC2P1-201ENST00000399358 958 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AL590084.2-201ENST00000401481 382 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AL591848.1-201ENST00000413092 322 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 RPL7P44-201ENST00000424827 742 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC098826.1-201ENST00000433943 471 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AL353706.1-201ENST00000436728 494 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 HMGB1P48-201ENST00000446155 598 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC108463.1-201ENST00000450258 347 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.02□□□□□ -1.77
LMX1BO60663 AC090142.1-201ENST00000465776 462 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 SYPL1P1-201ENST00000473622 768 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.02□□□□□ -1.77
LMX1BO60663 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.02□□□□□ -1.77
LMX1BO60663 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.02□□□□□ -1.77
LMX1BO60663 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC4.02□□□□□ -1.77
LMX1BO60663 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.02□□□□□ -1.77
LMX1BO60663 MTCO3P7-201ENST00000510008 774 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.02□□□□□ -1.77
LMX1BO60663 AC093840.1-201ENST00000511599 336 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC021146.3-201ENST00000511911 260 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC093755.1-201ENST00000512950 1023 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 RNU1-6P-201ENST00000516290 144 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC109635.6-201ENST00000525487 1113 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.02□□□□□ -1.77
LMX1BO60663 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.02□□□□□ -1.77
LMX1BO60663 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.02□□□□□ -1.77
LMX1BO60663 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.02□□□□□ -1.77
LMX1BO60663 AC025260.1-201ENST00000548858 430 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 DUX4L52-201ENST00000549363 777 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.02□□□□□ -1.77
LMX1BO60663 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.02□□□□□ -1.77
LMX1BO60663 AL110118.1-201ENST00000553543 400 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC105129.1-201ENST00000560250 297 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC011260.1-201ENST00000578420 472 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.02□□□□□ -1.77
LMX1BO60663 AL163642.2-201ENST00000604722 1019 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 BNIP3P4-201ENST00000604946 565 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AL590392.1-201ENST00000604960 446 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms