Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC243756.2-201ENST00000618406 463 ntBASIC4.23□□□□□ -1.73
CLDN3O15551 AC242843.1-201ENST00000618702 573 ntBASIC4.23□□□□□ -1.73
CLDN3O15551 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.23□□□□□ -1.73
CLDN3O15551 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CLDN3O15551 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLDN3O15551 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN3O15551 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN3O15551 AC022031.1-201ENST00000585985 2593 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN3O15551 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.22□□□□□ -1.73
CLDN3O15551 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN3O15551 MIR30B-201ENST00000384850 88 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 MIR199A2-201ENST00000385289 110 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC025750.1-201ENST00000399891 379 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.22□□□□□ -1.73
CLDN3O15551 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.22□□□□□ -1.73
CLDN3O15551 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN3O15551 AL391219.1-201ENST00000422570 483 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC087650.1-201ENST00000431445 468 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN3O15551 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.22□□□□□ -1.73
CLDN3O15551 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN3O15551 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC104306.1-201ENST00000449702 371 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.22□□□□□ -1.73
CLDN3O15551 AL121877.1-201ENST00000453704 622 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC096992.1-201ENST00000459808 709 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.22□□□□□ -1.73
CLDN3O15551 TRBV8-2-201ENST00000475637 270 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 HMGB1P21-201ENST00000502313 581 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC146944.2-203ENST00000502493 354 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC026726.1-201ENST00000512859 601 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC139495.1-202ENST00000513164 354 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC090281.1-201ENST00000523019 276 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.22□□□□□ -1.73
CLDN3O15551 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN3O15551 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
CLDN3O15551 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC233266.2-201ENST00000567067 528 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC107982.3-201ENST00000584957 985 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC004775.1-201ENST00000607389 753 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 MIR1264-201ENST00000616374 69 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AC004825.2-201ENST00000616634 455 ntBASIC4.22□□□□□ -1.73
CLDN3O15551 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.22□□□□□ -1.73
CLDN3O15551 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CLDN3O15551 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
CLDN3O15551 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN3O15551 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN3O15551 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.22□□□□□ -1.73
CLDN3O15551 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CLDN3O15551 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.22□□□□□ -1.73
CLDN3O15551 AL049737.1-201ENST00000413920 1403 ntBASIC4.21□□□□□ -1.73
CLDN3O15551 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.21□□□□□ -1.73
CLDN3O15551 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
CLDN3O15551 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
CLDN3O15551 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.21□□□□□ -1.74
CLDN3O15551 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN3O15551 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN3O15551 IPO8P1-201ENST00000455509 3109 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN3O15551 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.21□□□□□ -1.74
CLDN3O15551 U1.1-201ENST00000384101 164 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CLDN3O15551 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.21□□□□□ -1.74
CLDN3O15551 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN3O15551 RNA5SP239-201ENST00000410218 129 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 RN7SKP159-201ENST00000410657 292 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 RPL36AP36-201ENST00000418616 301 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.21□□□□□ -1.74
CLDN3O15551 AC023347.2-201ENST00000433994 462 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.21□□□□□ -1.74
CLDN3O15551 YWHAQP9-201ENST00000445891 512 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CLDN3O15551 RPS17P13-201ENST00000448974 407 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 AC069499.1-201ENST00000489433 509 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 AC109458.1-201ENST00000508858 316 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.21□□□□□ -1.74
CLDN3O15551 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN3O15551 RNU6-352P-201ENST00000516908 107 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.21□□□□□ -1.74
CLDN3O15551 PTP4A1P6-201ENST00000531034 478 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.21□□□□□ -1.74
CLDN3O15551 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.21□□□□□ -1.74
CLDN3O15551 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.21□□□□□ -1.74
CLDN3O15551 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.21□□□□□ -1.74
CLDN3O15551 MRPS35P3-201ENST00000603189 709 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 AC010680.4-201ENST00000605334 543 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 AL109618.2-201ENST00000605527 211 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.21□□□□□ -1.74
CLDN3O15551 AC103858.2-201ENST00000621471 543 ntBASIC4.21□□□□□ -1.74
CLDN3O15551 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLDN3O15551 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.21□□□□□ -1.74
CLDN3O15551 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms