Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 AL121895.2-201ENST00000619558 447 ntBASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 EIF2AP4-201ENST00000424793 1781 ntBASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
PDLIM3Q53GG5 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 KARSP3-201ENST00000571212 1504 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC025263.3-201ENST00000622965 1396 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 RNU1-83P-201ENST00000363426 164 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 RNU4-51P-201ENST00000364206 140 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 MIR513B-201ENST00000385136 84 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 MIR298-201ENST00000401212 88 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 MTCO2P31-201ENST00000402702 684 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 RPL23AP48-201ENST00000406913 488 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 HIGD1AP15-201ENST00000416198 280 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 RPL31P45-201ENST00000419532 356 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 RPL21P43-201ENST00000425440 472 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AL359265.2-201ENST00000434367 631 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 RPL23AP83-201ENST00000434984 473 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 IGHV5-78-201ENST00000450948 295 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 USP9YP25-201ENST00000457708 443 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 DYNLL1P6-201ENST00000503440 264 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 COX6B1P5-201ENST00000509843 249 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 SAP18P1-201ENST00000512058 390 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 RNU6-202P-201ENST00000515998 96 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 RN7SKP287-201ENST00000516546 266 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 MIR4715-201ENST00000584117 79 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC093424.1-201ENST00000604999 338 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AP003117.2-201ENST00000606010 545 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AL158196.1-201ENST00000616786 434 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AC087821.2-201ENST00000637086 450 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AL596275.2-204ENST00000641628 552 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 AL596275.2-206ENST00000641957 626 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 LINC02211-204ENST00000642024 1070 ntBASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PDLIM3Q53GG5 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 MTCO1P14-201ENST00000441695 1559 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 RNA5SP387-201ENST00000364226 106 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 MIR670-201ENST00000390142 98 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 U3.22-201ENST00000391120 215 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AL079342.2-201ENST00000403367 482 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AL136310.1-201ENST00000404926 654 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 RPL31-204ENST00000409038 817 ntTSL 2 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 NRBF2P2-201ENST00000413087 861 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms