Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RPS3AP50-201ENST00000487064 803 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXF1Q12946 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXF1Q12946 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXF1Q12946 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXF1Q12946 CBX3P5-201ENST00000552017 521 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXF1Q12946 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.21□□□□□ -1.9
FOXF1Q12946 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXF1Q12946 AC006946.3-201ENST00000609791 756 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 AC006133.1-201ENST00000617106 264 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXF1Q12946 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXF1Q12946 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXF1Q12946 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXF1Q12946 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXF1Q12946 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXF1Q12946 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXF1Q12946 SPATA2P1-201ENST00000431223 2055 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 PRO1804-201ENST00000623780 2050 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
FOXF1Q12946 AL049555.1-201ENST00000562834 1933 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 AC010329.2-201ENST00000595195 2737 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
FOXF1Q12946 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXF1Q12946 OTUD4P1-201ENST00000237841 3067 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
FOXF1Q12946 AC011155.1-201ENST00000316512 456 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXF1Q12946 FRG1CP-201ENST00000358464 769 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 RNA5SP105-201ENST00000391123 113 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXF1Q12946 AL159169.1-201ENST00000421119 127 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXF1Q12946 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXF1Q12946 CYCSP4-201ENST00000429682 331 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 AC091286.1-201ENST00000431233 461 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXF1Q12946 HSPD1P21-201ENST00000436541 245 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.2□□□□□ -1.9
FOXF1Q12946 AL157884.3-201ENST00000448273 1184 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 AL645939.1-201ENST00000453429 797 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXF1Q12946 RN7SKP13-201ENST00000515933 244 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 SNORA70.17-201ENST00000516449 133 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 snoU109.6-201ENST00000516831 118 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 IGKV2D-19-201ENST00000523346 262 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXF1Q12946 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.2□□□□□ -1.9
FOXF1Q12946 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXF1Q12946 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXF1Q12946 MIR3158-1-201ENST00000583596 81 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 AC245389.1-201ENST00000605141 529 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXF1Q12946 AC004241.3-201ENST00000611728 517 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
FOXF1Q12946 AC009093.8-201ENST00000641769 292 ntBASIC3.2□□□□□ -1.9
FOXF1Q12946 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXF1Q12946 AL122126.1-201ENST00000546905 1318 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 AC106871.1-201ENST00000568324 3102 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXF1Q12946 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AL592437.2-201ENST00000421655 2434 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 RPS29P4-201ENST00000414733 161 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXF1Q12946 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXF1Q12946 AC002075.2-201ENST00000425207 252 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 AC073063.1-201ENST00000434352 607 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AC099560.2-201ENST00000457554 255 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 RN7SL594P-201ENST00000470590 287 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 AC023598.1-201ENST00000472521 361 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AC106707.2-201ENST00000484182 374 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 RPL23AP73-201ENST00000492507 471 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXF1Q12946 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXF1Q12946 RNU2-27P-201ENST00000516185 142 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 SNORA67.7-201ENST00000516664 135 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXF1Q12946 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AP000926.4-201ENST00000527351 454 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 OR8I1P-201ENST00000529291 931 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.19□□□□□ -1.9
FOXF1Q12946 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AC017076.1-201ENST00000607613 578 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 AC092628.2-201ENST00000622492 339 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 AP006248.2-201ENST00000623309 592 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXF1Q12946 AC100871.1-201ENST00000507871 1456 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXF1Q12946 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXF1Q12946 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AL445437.1-201ENST00000623157 3087 ntBASIC3.19□□□□□ -1.9
FOXF1Q12946 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXF1Q12946 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 170.6 ms