Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA3P55318 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
FOXA3P55318 AL672296.1-201ENST00000427780 2158 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA3P55318 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA3P55318 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA3P55318 FER-202ENST00000438717 1531 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA3P55318 RNA5SP383-201ENST00000362934 120 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 RNVU1-6-201ENST00000364688 164 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 RNA5SP97-201ENST00000365006 84 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 U3.22-201ENST00000391120 215 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AP000567.1-201ENST00000406413 156 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA3P55318 COX6CP15-201ENST00000426313 211 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 BX890604.2-201ENST00000427883 474 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA3P55318 AL645931.1-201ENST00000439737 410 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA3P55318 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA3P55318 TXNP2-201ENST00000443918 295 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AL353898.1-201ENST00000444055 238 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AL357552.1-201ENST00000445254 415 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC2.7□□□□□ -1.98
FOXA3P55318 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA3P55318 PPIAP3-201ENST00000450588 505 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 RPL35AP28-201ENST00000459730 331 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA3P55318 AP002884.2-201ENST00000471647 395 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AC084357.1-201ENST00000473404 255 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 RPL32P9-201ENST00000487963 407 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 RPS4XP15-201ENST00000489210 795 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC2.7□□□□□ -1.98
FOXA3P55318 FTH1P24-201ENST00000503502 462 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA3P55318 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA3P55318 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA3P55318 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA3P55318 AC037471.2-201ENST00000564941 598 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC2.7□□□□□ -1.98
FOXA3P55318 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.7□□□□□ -1.98
FOXA3P55318 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA3P55318 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA3P55318 MIR3138-201ENST00000585238 82 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA3P55318 SNORA51-201ENST00000606420 132 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA3P55318 AC105429.2-201ENST00000610567 517 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA3P55318 AC005156.1-201ENST00000613371 573 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 PDCD6IPP1-202ENST00000622242 1064 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AP003072.5-201ENST00000623872 773 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 AP001784.1-201ENST00000624107 428 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA3P55318 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA3P55318 AC118273.1-201ENST00000525324 3006 ntBASIC2.7□□□□□ -1.98
FOXA3P55318 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA3P55318 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA3P55318 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
FOXA3P55318 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
FOXA3P55318 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA3P55318 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA3P55318 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXA3P55318 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA3P55318 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA3P55318 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
FOXA3P55318 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA3P55318 RNA5SP295-201ENST00000362655 121 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 RNA5SP509-201ENST00000364577 119 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 CD2-201ENST00000369477 478 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA3P55318 RNA5SP107-201ENST00000411358 122 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA3P55318 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA3P55318 AC245291.1-201ENST00000419501 328 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC2.69□□□□□ -1.98
FOXA3P55318 RPS27AP7-201ENST00000422792 455 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 GLRXP1-201ENST00000423261 334 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 SDCBPP2-201ENST00000424643 885 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AL691449.1-201ENST00000426570 421 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 FAR1P1-201ENST00000427163 934 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 DNAJC19P7-201ENST00000428811 344 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA3P55318 CBX1P4-201ENST00000439415 457 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.69□□□□□ -1.98
FOXA3P55318 AC239367.2-201ENST00000447309 705 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 RAB28P3-201ENST00000448325 597 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA3P55318 SLC31A1P1-201ENST00000451221 567 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC007967.1-201ENST00000455422 1159 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC010618.1-201ENST00000469924 477 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC006463.2-201ENST00000473326 348 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXA3P55318 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC2.69□□□□□ -1.98
FOXA3P55318 KCTD9P5-201ENST00000504141 1170 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 PHBP14-201ENST00000512887 367 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA3P55318 RN7SKP82-201ENST00000516786 223 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 NAT2-202ENST00000520116 716 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA3P55318 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA3P55318 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC2.69□□□□□ -1.98
FOXA3P55318 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms