Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CUX1P39880 JKAMPP1-201ENST00000413804 919 ntBASIC5.61□□□□□ -1.51
CUX1P39880 AL353678.1-201ENST00000422735 741 ntBASIC5.61□□□□□ -1.51
CUX1P39880 AC069306.1-201ENST00000507006 843 ntBASIC5.61□□□□□ -1.51
CUX1P39880 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC5.61□□□□□ -1.51
CUX1P39880 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CUX1P39880 AC006504.3-201ENST00000586818 523 ntBASIC5.61□□□□□ -1.51
CUX1P39880 AC006557.5-201ENST00000603126 811 ntBASIC5.61□□□□□ -1.51
CUX1P39880 BTBD10P1-201ENST00000549824 1352 ntBASIC5.61□□□□□ -1.51
CUX1P39880 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC5.6□□□□□ -1.51
CUX1P39880 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CUX1P39880 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
CUX1P39880 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC5.6□□□□□ -1.51
CUX1P39880 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.6□□□□□ -1.51
CUX1P39880 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.6□□□□□ -1.51
CUX1P39880 RNA5SP104-201ENST00000410989 118 ntBASIC5.6□□□□□ -1.51
CUX1P39880 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC5.6□□□□□ -1.51
CUX1P39880 MRPL35P4-201ENST00000453682 566 ntBASIC5.6□□□□□ -1.51
CUX1P39880 RPL21P8-201ENST00000465083 535 ntBASIC5.6□□□□□ -1.51
CUX1P39880 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.6□□□□□ -1.51
CUX1P39880 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CUX1P39880 AC008885.1-201ENST00000514930 301 ntBASIC5.6□□□□□ -1.51
CUX1P39880 OR5AP1P-201ENST00000529730 940 ntBASIC5.6□□□□□ -1.51
CUX1P39880 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC5.6□□□□□ -1.51
CUX1P39880 HIGD1AP1-201ENST00000550979 275 ntBASIC5.6□□□□□ -1.51
CUX1P39880 MIR2682-201ENST00000580305 110 ntBASIC5.6□□□□□ -1.51
CUX1P39880 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.6□□□□□ -1.51
CUX1P39880 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CUX1P39880 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC5.6□□□□□ -1.51
CUX1P39880 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CUX1P39880 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.59□□□□□ -1.51
CUX1P39880 MIR422A-201ENST00000362286 90 ntBASIC5.59□□□□□ -1.51
CUX1P39880 RPSAP41-201ENST00000439695 860 ntBASIC5.59□□□□□ -1.51
CUX1P39880 TEX41-209ENST00000451478 452 ntTSL 2 BASIC5.59□□□□□ -1.51
CUX1P39880 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC5.59□□□□□ -1.51
CUX1P39880 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC5.59□□□□□ -1.51
CUX1P39880 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC5.59□□□□□ -1.51
CUX1P39880 AC110801.1-201ENST00000623590 212 ntBASIC5.59□□□□□ -1.51
CUX1P39880 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CUX1P39880 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CUX1P39880 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
CUX1P39880 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CUX1P39880 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CUX1P39880 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CUX1P39880 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CUX1P39880 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CUX1P39880 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CUX1P39880 AC068647.1-201ENST00000489539 2265 ntBASIC5.59□□□□□ -1.52
CUX1P39880 SNORA7.4-201ENST00000384249 137 ntBASIC5.58□□□□□ -1.52
CUX1P39880 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX1P39880 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC5.58□□□□□ -1.52
CUX1P39880 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.58□□□□□ -1.52
CUX1P39880 ZDHHC20P2-201ENST00000424108 429 ntBASIC5.58□□□□□ -1.52
CUX1P39880 AL139132.1-201ENST00000431587 344 ntBASIC5.58□□□□□ -1.52
CUX1P39880 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.58□□□□□ -1.52
CUX1P39880 AC006028.1-201ENST00000438379 402 ntBASIC5.58□□□□□ -1.52
CUX1P39880 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC5.58□□□□□ -1.52
CUX1P39880 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.58□□□□□ -1.52
CUX1P39880 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC5.58□□□□□ -1.52
CUX1P39880 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC5.58□□□□□ -1.52
CUX1P39880 AL158062.1-201ENST00000619632 745 ntBASIC5.58□□□□□ -1.52
CUX1P39880 AC073073.2-201ENST00000609827 2578 ntBASIC5.58□□□□□ -1.52
CUX1P39880 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX1P39880 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
CUX1P39880 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CUX1P39880 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX1P39880 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.58□□□□□ -1.52
CUX1P39880 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX1P39880 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX1P39880 NACA3P-201ENST00000359690 648 ntBASIC5.58□□□□□ -1.52
CUX1P39880 RPS26P47-201ENST00000427219 348 ntBASIC5.58□□□□□ -1.52
CUX1P39880 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.58□□□□□ -1.52
CUX1P39880 RPS26P3-201ENST00000470205 348 ntBASIC5.58□□□□□ -1.52
CUX1P39880 AC004057.1-201ENST00000485827 348 ntBASIC5.58□□□□□ -1.52
CUX1P39880 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.58□□□□□ -1.52
CUX1P39880 APOOP4-201ENST00000513530 597 ntBASIC5.58□□□□□ -1.52
CUX1P39880 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CUX1P39880 HNRNPDLP4-201ENST00000605144 301 ntBASIC5.58□□□□□ -1.52
CUX1P39880 LINC02471-203ENST00000641941 4752 ntBASIC5.57□□□□□ -1.52
CUX1P39880 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.57□□□□□ -1.52
CUX1P39880 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUX1P39880 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUX1P39880 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUX1P39880 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CUX1P39880 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC5.57□□□□□ -1.52
CUX1P39880 RNU6-729P-201ENST00000384399 107 ntBASIC5.57□□□□□ -1.52
CUX1P39880 UBE2V1P2-201ENST00000397758 440 ntBASIC5.57□□□□□ -1.52
CUX1P39880 HSPE1P8-201ENST00000406997 288 ntBASIC5.57□□□□□ -1.52
CUX1P39880 RNA5SP80-201ENST00000410475 111 ntBASIC5.57□□□□□ -1.52
CUX1P39880 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC5.57□□□□□ -1.52
CUX1P39880 IFNNP1-201ENST00000429219 553 ntBASIC5.57□□□□□ -1.52
CUX1P39880 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.57□□□□□ -1.52
CUX1P39880 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC5.57□□□□□ -1.52
CUX1P39880 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC5.57□□□□□ -1.52
CUX1P39880 MYL12AP1-201ENST00000518490 515 ntBASIC5.57□□□□□ -1.52
CUX1P39880 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.57□□□□□ -1.52
CUX1P39880 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC5.57□□□□□ -1.52
CUX1P39880 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
CUX1P39880 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.57□□□□□ -1.52
CUX1P39880 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms