Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TXNP5-201ENST00000441043 315 ntBASIC5.06□□□□□ -1.6
MSX2P35548 DPPA3P1-201ENST00000448050 469 ntBASIC5.06□□□□□ -1.6
MSX2P35548 PPIAP27-201ENST00000453800 265 ntBASIC5.06□□□□□ -1.6
MSX2P35548 RPL10P17-201ENST00000453852 316 ntBASIC5.06□□□□□ -1.6
MSX2P35548 MTND1P11-201ENST00000456661 876 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC022215.1-201ENST00000481770 362 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC091951.2-201ENST00000500762 203 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX2P35548 HMGB1P28-201ENST00000507778 552 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX2P35548 AC114781.3-201ENST00000512083 142 ntBASIC5.06□□□□□ -1.6
MSX2P35548 Y_RNA.667-201ENST00000516212 107 ntBASIC5.06□□□□□ -1.6
MSX2P35548 RNU6-875P-201ENST00000516488 106 ntBASIC5.06□□□□□ -1.6
MSX2P35548 RNU6-347P-201ENST00000516658 105 ntBASIC5.06□□□□□ -1.6
MSX2P35548 RNU6-430P-201ENST00000517078 107 ntBASIC5.06□□□□□ -1.6
MSX2P35548 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC5.06□□□□□ -1.6
MSX2P35548 OR5M7P-201ENST00000526140 972 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX2P35548 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX2P35548 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX2P35548 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX2P35548 OR6C73P-201ENST00000546432 358 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC006349.1-201ENST00000555526 235 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX2P35548 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.06□□□□□ -1.6
MSX2P35548 AC007497.1-201ENST00000610421 561 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC010133.1-201ENST00000615809 842 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC037198.3-201ENST00000616754 526 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.06□□□□□ -1.6
MSX2P35548 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
MSX2P35548 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.06□□□□□ -1.6
MSX2P35548 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX2P35548 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSX2P35548 AC092326.2-201ENST00000624772 1561 ntBASIC5.06□□□□□ -1.6
MSX2P35548 AC017104.4-201ENST00000636283 1592 ntBASIC5.06□□□□□ -1.6
MSX2P35548 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSX2P35548 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
MSX2P35548 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.05□□□□□ -1.6
MSX2P35548 MTND5P17-201ENST00000418405 1603 ntBASIC5.05□□□□□ -1.6
MSX2P35548 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 SOCS5P3-201ENST00000425115 1576 ntBASIC5.05□□□□□ -1.6
MSX2P35548 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
MSX2P35548 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
MSX2P35548 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX2P35548 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 AL672167.1-205ENST00000641112 3080 ntBASIC5.05□□□□□ -1.6
MSX2P35548 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.05□□□□□ -1.6
MSX2P35548 Y_RNA.97-201ENST00000363094 102 ntBASIC5.05□□□□□ -1.6
MSX2P35548 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX2P35548 XGY1-201ENST00000381172 446 ntBASIC5.05□□□□□ -1.6
MSX2P35548 RNU1-74P-201ENST00000384108 171 ntBASIC5.05□□□□□ -1.6
MSX2P35548 SNORD116-23-201ENST00000384645 92 ntBASIC5.05□□□□□ -1.6
MSX2P35548 MT-TL1-201ENST00000386347 75 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AL512422.1-201ENST00000407033 553 ntBASIC5.05□□□□□ -1.6
MSX2P35548 RNA5SP296-201ENST00000410523 111 ntBASIC5.05□□□□□ -1.6
MSX2P35548 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.05□□□□□ -1.6
MSX2P35548 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX2P35548 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC5.05□□□□□ -1.6
MSX2P35548 RPS27AP14-201ENST00000422868 454 ntBASIC5.05□□□□□ -1.6
MSX2P35548 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AL356583.2-201ENST00000426536 280 ntBASIC5.05□□□□□ -1.6
MSX2P35548 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 MTND6P12-201ENST00000428247 522 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AC110602.1-201ENST00000437414 318 ntBASIC5.05□□□□□ -1.6
MSX2P35548 RPL18AP17-201ENST00000455326 198 ntBASIC5.05□□□□□ -1.6
MSX2P35548 RNU6-1218P-201ENST00000458990 108 ntBASIC5.05□□□□□ -1.6
MSX2P35548 RN7SL814P-201ENST00000487715 300 ntBASIC5.05□□□□□ -1.6
MSX2P35548 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX2P35548 AC005912.1-201ENST00000495392 255 ntBASIC5.05□□□□□ -1.6
MSX2P35548 MTCYBP18-201ENST00000501056 747 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AC108078.1-201ENST00000508073 725 ntBASIC5.05□□□□□ -1.6
MSX2P35548 STMN1P2-201ENST00000508435 439 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX2P35548 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.05□□□□□ -1.6
MSX2P35548 RNU6-1261P-201ENST00000517194 104 ntBASIC5.05□□□□□ -1.6
MSX2P35548 OR5AQ1P-201ENST00000527596 927 ntBASIC5.05□□□□□ -1.6
MSX2P35548 SLC2A13P1-201ENST00000531560 322 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AP004607.2-201ENST00000533949 322 ntBASIC5.05□□□□□ -1.6
MSX2P35548 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.05□□□□□ -1.6
MSX2P35548 AC079905.1-201ENST00000549280 475 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.05□□□□□ -1.6
MSX2P35548 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.05□□□□□ -1.6
MSX2P35548 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX2P35548 AC002310.3-201ENST00000569728 723 ntBASIC5.05□□□□□ -1.6
MSX2P35548 RN7SL753P-201ENST00000581238 290 ntBASIC5.05□□□□□ -1.6
MSX2P35548 DUXAP4-201ENST00000603046 613 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AC011626.1-201ENST00000604710 562 ntBASIC5.05□□□□□ -1.6
MSX2P35548 RNU6-88P-201ENST00000606801 100 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC5.05□□□□□ -1.6
MSX2P35548 AL359535.1-201ENST00000612100 1087 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AL592295.2-201ENST00000612578 206 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AC234782.5-201ENST00000617723 324 ntBASIC5.05□□□□□ -1.6
MSX2P35548 AP005431.1-201ENST00000618479 319 ntBASIC5.05□□□□□ -1.6
MSX2P35548 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
MSX2P35548 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms