Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HOXD3P31249 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 MTCO3P31-201ENST00000405526 789 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HOXD3P31249 RN7SKP247-201ENST00000411094 308 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 RNU6-603P-201ENST00000411403 107 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 UBTFL3-201ENST00000418934 1024 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HOXD3P31249 AL354766.1-201ENST00000423396 542 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 SLC44A3-AS1-205ENST00000424505 612 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC104651.1-201ENST00000427559 735 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AL365184.2-201ENST00000431139 435 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 RPL37P1-201ENST00000432310 284 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXD3P31249 AL049745.1-201ENST00000433953 286 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXD3P31249 MTND1P4-201ENST00000435196 415 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 MTND1P28-201ENST00000435623 950 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 YWHAZP8-201ENST00000436935 731 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC241584.1-201ENST00000438469 1241 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXD3P31249 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXD3P31249 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXD3P31249 RPS3AP41-201ENST00000462701 778 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AC104763.1-201ENST00000475274 360 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 UBTFL6-201ENST00000477929 1024 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 RPL7P41-201ENST00000485823 957 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AC007686.1-201ENST00000488511 463 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 RNU6-583P-201ENST00000516012 92 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC027309.2-201ENST00000520566 192 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 BRD9P1-201ENST00000529855 560 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXD3P31249 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 AC245505.1-201ENST00000556398 224 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXD3P31249 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXD3P31249 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC010200.2-201ENST00000605098 235 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AC108747.1-201ENST00000609508 535 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AC008498.1-201ENST00000613012 531 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 EIF3FP1-201ENST00000613970 806 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AL357080.1-201ENST00000617394 239 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 RNA5SP439-201ENST00000617595 124 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AC018816.2-201ENST00000621460 353 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 AL445437.1-201ENST00000623157 3087 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 MTCO1P23-201ENST00000415223 1526 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 AC005832.2-201ENST00000538921 1430 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 PHKBP1-201ENST00000450951 1951 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD3P31249 AC009229.4-201ENST00000623854 1947 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD3P31249 DBF4P1-201ENST00000412976 1892 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD3P31249 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC090971.4-201ENST00000560291 1800 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 OR10J6P-201ENST00000289731 930 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 OR9G4-201ENST00000302957 984 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 SNRPEP3-201ENST00000338402 276 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 RNU6-723P-201ENST00000383973 107 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 SNORA51.8-201ENST00000384234 132 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 RNU6-1122P-201ENST00000384449 107 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 MIR600-201ENST00000385007 98 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 AL078604.1-201ENST00000404609 466 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC007899.1-201ENST00000412776 775 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms