Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.43□□□□□ -1.86
USF1P22415 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.43□□□□□ -1.86
USF1P22415 AC104687.1-201ENST00000485829 412 ntBASIC3.43□□□□□ -1.86
USF1P22415 BNIP3P41-201ENST00000503774 571 ntBASIC3.43□□□□□ -1.86
USF1P22415 MTATP6P22-201ENST00000507369 598 ntBASIC3.43□□□□□ -1.86
USF1P22415 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.43□□□□□ -1.86
USF1P22415 SNORA70.14-201ENST00000516205 110 ntBASIC3.43□□□□□ -1.86
USF1P22415 RN7SKP82-201ENST00000516786 223 ntBASIC3.43□□□□□ -1.86
USF1P22415 IGKV2D-23-201ENST00000518179 286 ntBASIC3.43□□□□□ -1.86
USF1P22415 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.43□□□□□ -1.86
USF1P22415 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.43□□□□□ -1.86
USF1P22415 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.43□□□□□ -1.86
USF1P22415 POLR2KP1-201ENST00000553226 168 ntBASIC3.43□□□□□ -1.86
USF1P22415 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.43□□□□□ -1.86
USF1P22415 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.43□□□□□ -1.86
USF1P22415 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.43□□□□□ -1.86
USF1P22415 PCNAP1-202ENST00000595299 752 ntBASIC3.43□□□□□ -1.86
USF1P22415 AC010680.4-201ENST00000605334 543 ntBASIC3.43□□□□□ -1.86
USF1P22415 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.43□□□□□ -1.86
USF1P22415 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.43□□□□□ -1.86
USF1P22415 OR5BE1P-202ENST00000641168 1176 ntBASIC3.43□□□□□ -1.86
USF1P22415 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.43□□□□□ -1.86
USF1P22415 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.43□□□□□ -1.86
USF1P22415 NOL8P1-201ENST00000508336 3529 ntBASIC3.43□□□□□ -1.86
USF1P22415 FAM91A3P-201ENST00000456826 2544 ntBASIC3.43□□□□□ -1.86
USF1P22415 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
USF1P22415 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
USF1P22415 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
USF1P22415 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
USF1P22415 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
USF1P22415 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
USF1P22415 MTCO1P14-201ENST00000441695 1559 ntBASIC3.42□□□□□ -1.86
USF1P22415 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
USF1P22415 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.42□□□□□ -1.86
USF1P22415 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
USF1P22415 AL161912.2-201ENST00000565707 3007 ntBASIC3.42□□□□□ -1.86
USF1P22415 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
USF1P22415 AC083899.2-201ENST00000423285 1376 ntBASIC3.42□□□□□ -1.86
USF1P22415 AC017007.4-201ENST00000503353 1352 ntBASIC3.42□□□□□ -1.86
USF1P22415 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
USF1P22415 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
USF1P22415 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.42□□□□□ -1.86
USF1P22415 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
USF1P22415 AC004022.2-201ENST00000413824 193 ntBASIC3.42□□□□□ -1.86
USF1P22415 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC3.42□□□□□ -1.86
USF1P22415 AC092647.1-201ENST00000420654 287 ntBASIC3.42□□□□□ -1.86
USF1P22415 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.42□□□□□ -1.86
USF1P22415 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.42□□□□□ -1.86
USF1P22415 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.42□□□□□ -1.86
USF1P22415 AC114878.1-201ENST00000441166 358 ntBASIC3.42□□□□□ -1.86
USF1P22415 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
USF1P22415 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC3.42□□□□□ -1.86
USF1P22415 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.42□□□□□ -1.86
USF1P22415 RSL24D1P2-201ENST00000445584 366 ntBASIC3.42□□□□□ -1.86
USF1P22415 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.42□□□□□ -1.86
USF1P22415 snoU13.22-201ENST00000459428 104 ntBASIC3.42□□□□□ -1.86
USF1P22415 AC006517.1-201ENST00000480485 328 ntBASIC3.42□□□□□ -1.86
USF1P22415 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.42□□□□□ -1.86
USF1P22415 RPL29P14-201ENST00000495837 428 ntBASIC3.42□□□□□ -1.86
USF1P22415 NIPA2P2-201ENST00000496376 1083 ntBASIC3.42□□□□□ -1.86
USF1P22415 AL139099.1-201ENST00000497398 403 ntBASIC3.42□□□□□ -1.86
USF1P22415 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.42□□□□□ -1.86
USF1P22415 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.42□□□□□ -1.86
USF1P22415 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.42□□□□□ -1.86
USF1P22415 NOP56P3-201ENST00000549457 385 ntBASIC3.42□□□□□ -1.86
USF1P22415 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.42□□□□□ -1.86
USF1P22415 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.42□□□□□ -1.86
USF1P22415 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC3.42□□□□□ -1.86
USF1P22415 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.42□□□□□ -1.86
USF1P22415 AGGF1P8-201ENST00000562979 1000 ntBASIC3.42□□□□□ -1.86
USF1P22415 MIR3944-201ENST00000581277 108 ntBASIC3.42□□□□□ -1.86
USF1P22415 AC020914.4-201ENST00000597690 277 ntBASIC3.42□□□□□ -1.86
USF1P22415 AC024220.1-201ENST00000603675 484 ntBASIC3.42□□□□□ -1.86
USF1P22415 AL592436.1-201ENST00000605135 558 ntBASIC3.42□□□□□ -1.86
USF1P22415 AL354798.1-201ENST00000622505 329 ntBASIC3.42□□□□□ -1.86
USF1P22415 AL359715.5-201ENST00000623431 443 ntBASIC3.42□□□□□ -1.86
USF1P22415 AC104820.1-201ENST00000624183 307 ntBASIC3.42□□□□□ -1.86
USF1P22415 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.42□□□□□ -1.86
USF1P22415 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
USF1P22415 AL627171.1-201ENST00000618845 1308 ntBASIC3.42□□□□□ -1.86
USF1P22415 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
USF1P22415 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.42□□□□□ -1.86
USF1P22415 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
USF1P22415 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC3.41□□□□□ -1.86
USF1P22415 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.41□□□□□ -1.86
USF1P22415 AC138393.1-206ENST00000540997 1886 ntBASIC3.41□□□□□ -1.86
USF1P22415 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
USF1P22415 AC025125.1-201ENST00000624743 1922 ntBASIC3.41□□□□□ -1.86
USF1P22415 RNU6-40P-201ENST00000384254 107 ntBASIC3.41□□□□□ -1.86
USF1P22415 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.41□□□□□ -1.86
USF1P22415 AC234782.4-201ENST00000417646 1048 ntBASIC3.41□□□□□ -1.86
USF1P22415 RPS12P23-201ENST00000419579 400 ntBASIC3.41□□□□□ -1.86
USF1P22415 FO393419.3-201ENST00000428741 282 ntBASIC3.41□□□□□ -1.86
USF1P22415 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.41□□□□□ -1.86
USF1P22415 AL445584.1-201ENST00000431451 330 ntBASIC3.41□□□□□ -1.86
USF1P22415 AC006011.1-201ENST00000442758 349 ntBASIC3.41□□□□□ -1.86
USF1P22415 RPS4XP4-201ENST00000443195 763 ntBASIC3.41□□□□□ -1.86
USF1P22415 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.41□□□□□ -1.86
USF1P22415 RPS26P15-201ENST00000488067 348 ntBASIC3.41□□□□□ -1.86
USF1P22415 OR9N1P-202ENST00000494289 481 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms