Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 FO393419.3-201ENST00000428741 282 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 MRPS33P4-201ENST00000434892 317 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 RPL37P6-202ENST00000464216 403 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 RPL5P23-201ENST00000496040 868 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AC104164.2-201ENST00000496953 495 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 RNU2-58P-201ENST00000516403 183 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 RNU6-551P-201ENST00000516661 103 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 OR4C2P-201ENST00000530855 1064 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AC074029.1-201ENST00000552531 1044 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 HSPE1P5-201ENST00000561489 272 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AC006946.3-201ENST00000609791 756 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 MIR7151-201ENST00000617477 60 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 MIR6500-201ENST00000622700 86 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AL359715.5-201ENST00000623431 443 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 EXOC5P1-201ENST00000510543 1969 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 AC018555.1-201ENST00000567548 1980 ntBASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.12□□□□□ -1.75
TM9SF3Q9HD45 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 ZNF736P10Y-201ENST00000403990 1110 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 RNU2-65P-201ENST00000410162 185 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 RNU4-6P-201ENST00000410804 122 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 TCEA1P4-201ENST00000415066 844 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 RPS20P32-201ENST00000456044 356 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 RPL38P1-201ENST00000460914 211 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 AC110792.1-201ENST00000491826 472 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 AC106872.2-201ENST00000494303 480 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 AC023141.12-201ENST00000512399 199 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 RN7SKP141-201ENST00000516167 338 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 OR6C73P-201ENST00000546432 358 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 MIR5685-201ENST00000579080 79 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 MIR4496-201ENST00000635896 61 ntBASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.11□□□□□ -1.75
TM9SF3Q9HD45 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 AC116667.1-201ENST00000604855 2072 ntBASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 AL031985.3-201ENST00000565390 2449 ntBASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 MIR23A-201ENST00000385245 73 ntBASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 ZNF603P-201ENST00000405613 487 ntBASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 MIR1179-201ENST00000408703 91 ntBASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 HSPE1P12-201ENST00000412576 301 ntBASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 PTP4A1P5-201ENST00000420305 455 ntBASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 AC006946.1-201ENST00000429106 328 ntBASIC4.1□□□□□ -1.75
TM9SF3Q9HD45 AL445584.1-201ENST00000431451 330 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms