Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 NTAN1P1-201ENST00000603150 646 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AL161729.3-201ENST00000603533 673 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC026790.2-201ENST00000606282 430 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC026979.4-201ENST00000606555 645 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC017076.1-201ENST00000607613 578 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AP002360.3-201ENST00000607673 710 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AL355816.1-201ENST00000607951 118 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC099676.1-201ENST00000608886 657 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AL392048.1-201ENST00000613946 534 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC140113.4-201ENST00000622087 222 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 BMS1P21-201ENST00000634565 365 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC017104.5-201ENST00000637647 639 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AL133243.3-201ENST00000617415 3004 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AL049737.1-201ENST00000413920 1403 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 CYP1D1P-201ENST00000416662 1433 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 AC104446.1-201ENST00000613728 1321 ntBASIC4.19□□□□□ -1.74
CCDC3Q9BQI4 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RNU1-14P-201ENST00000362759 152 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RNA5SP307-201ENST00000362863 116 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RNA5SP175-201ENST00000364275 119 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RNA5SP283-201ENST00000365604 119 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 OR52E6-202ENST00000379946 954 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 SNORA51.12-201ENST00000384448 134 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 MIR23B-201ENST00000384832 97 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 MIR92A2-201ENST00000385299 75 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 SNORD96B-201ENST00000386148 79 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC097374.1-203ENST00000400783 485 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 SNORA11C-201ENST00000408532 129 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 MIR1303-201ENST00000408625 86 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RNA5SP36-201ENST00000410197 133 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC092634.2-201ENST00000428146 1010 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 COX6B1P7-201ENST00000430845 235 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 CEACAMP1-201ENST00000434624 1035 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RPS20P1-201ENST00000434853 354 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AL645638.1-201ENST00000440519 361 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 YWHAQP9-201ENST00000445891 512 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 BX248409.1-201ENST00000455497 255 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RPL35AP15-201ENST00000468042 339 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RPL21P129-201ENST00000491732 478 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 KCTD9P2-201ENST00000512203 1013 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 NDUFB4P12-201ENST00000513465 390 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AP001207.2-201ENST00000519490 539 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC090312.1-201ENST00000580637 348 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RN7SL600P-201ENST00000581811 299 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC022916.3-201ENST00000592961 742 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 RPL7P50-201ENST00000600588 727 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 BNIP3P4-201ENST00000604946 565 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AL021997.2-201ENST00000615674 271 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 CYCSP41-201ENST00000616920 296 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AL590396.4-201ENST00000636779 956 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 AC139713.2-210ENST00000641741 992 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 EOGT-210ENST00000615922 1931 ntBASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC3Q9BQI4 IQCB2P-201ENST00000401788 1633 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 RNU1-85P-201ENST00000364127 164 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AL078604.1-201ENST00000404609 466 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 ZNF602P-201ENST00000405929 924 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms