Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 AC011602.1-201ENST00000546484 331 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 AC092653.1-201ENST00000608509 531 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 AL592494.3-201ENST00000609485 464 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 CFTRP2-201ENST00000634304 199 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 AL356317.1-201ENST00000396110 1436 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC42Q96M95 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC42Q96M95 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 SPATA2P1-201ENST00000431223 2055 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 RIOK3P1-201ENST00000418778 1528 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC126755.2-208ENST00000327792 462 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC138969.1-213ENST00000331436 462 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 RNA5SP283-201ENST00000365604 119 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 RNU6-233P-201ENST00000410845 141 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 RPL12P26-201ENST00000452430 487 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC006539.3-201ENST00000454258 129 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AL133162.1-201ENST00000463228 453 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC010401.1-201ENST00000463867 348 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 RN7SL594P-201ENST00000470590 287 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AP000563.1-201ENST00000490865 758 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 FTH1P24-201ENST00000503502 462 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 SNORA70.19-201ENST00000516717 90 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 ABI1P1-201ENST00000603375 1120 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC006338.2-201ENST00000616864 791 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AL139811.1-201ENST00000424779 2299 ntBASIC3.82□□□□□ -1.8
CCDC42Q96M95 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 TANK-205ENST00000405852 2155 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC42Q96M95 AC058791.1-201ENST00000608412 3198 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC42Q96M95 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC42Q96M95 AL021368.2-201ENST00000606125 5352 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC42Q96M95 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC42Q96M95 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC069218.2-201ENST00000411665 344 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 LIPT1P1-201ENST00000415870 1186 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC073464.3-201ENST00000422564 712 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AL049610.1-201ENST00000423374 372 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 OR4F13P-201ENST00000428478 931 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 OR4C10P-201ENST00000434991 931 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 RPL9P32-201ENST00000464118 620 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 RPS20P21-201ENST00000466859 343 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC087312.1-201ENST00000471411 480 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC023598.1-201ENST00000472521 361 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 RPS4XP22-201ENST00000480755 780 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 SETP14-201ENST00000497538 873 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC093853.1-201ENST00000515689 483 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC106785.3-201ENST00000564064 847 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AGGF1P6-201ENST00000569213 976 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms