Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ASNSP1-204ENST00000641977 1664 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VPS39Q96JC1 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 GABPAP-201ENST00000419271 1356 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC046144.1-201ENST00000478559 1853 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC090337.1-201ENST00000579651 2074 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 SNORA31-201ENST00000362607 130 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 RNA5SP189-201ENST00000364920 115 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 SNORA51.12-201ENST00000384448 134 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 MIR1183-201ENST00000408856 89 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 RN7SKP182-201ENST00000410772 298 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC092647.1-201ENST00000420654 287 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 OR5AW1P-201ENST00000426334 1006 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 MTCO1P54-201ENST00000430139 712 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC007000.2-201ENST00000442564 487 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 RPS27P5-201ENST00000444247 244 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 FABP3P2-201ENST00000453169 399 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 RN7SL271P-201ENST00000487601 295 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC106872.2-201ENST00000494303 480 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 RPL29P14-201ENST00000495837 428 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC008565.1-201ENST00000509046 885 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 OR4C2P-201ENST00000530855 1064 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC027104.1-201ENST00000563702 681 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 MIR4700-201ENST00000578311 74 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AL356218.2-201ENST00000605264 187 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC128687.2-201ENST00000609657 566 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC020923.1-201ENST00000624021 917 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 MIR4278-201ENST00000636094 69 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AL773545.4-201ENST00000637262 310 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 AL513478.4-201ENST00000641636 310 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 AL157700.1-201ENST00000561973 1432 ntBASIC4.11□□□□□ -1.75
VPS39Q96JC1 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS39Q96JC1 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS39Q96JC1 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS39Q96JC1 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS39Q96JC1 RNU1-132P-201ENST00000364300 164 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AL356057.1-202ENST00000402263 756 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 UBE2V1P15-201ENST00000407776 448 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC092745.2-202ENST00000411880 369 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 PTP4A1P5-201ENST00000420305 455 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC234779.1-201ENST00000425910 285 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 MTND2P6-201ENST00000455337 1030 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 RNA5SP246-201ENST00000458909 119 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC013356.1-201ENST00000489027 564 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 RPL31P61-201ENST00000496160 376 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC068305.1-201ENST00000497406 726 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 KRT19P6-201ENST00000510983 209 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 RNU7-143P-201ENST00000516781 65 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC103833.1-201ENST00000517442 172 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC104115.2-201ENST00000523026 687 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AP003717.3-201ENST00000544832 1180 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 RPL23AP87-202ENST00000573039 466 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC012417.1-201ENST00000582307 1039 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms