Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.55□□□□□ -1.52
RNF4P78317 NPM1P42-201ENST00000560329 862 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.55□□□□□ -1.52
RNF4P78317 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.55□□□□□ -1.52
RNF4P78317 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.55□□□□□ -1.52
RNF4P78317 AC011712.1-201ENST00000588959 234 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.55□□□□□ -1.52
RNF4P78317 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.55□□□□□ -1.52
RNF4P78317 AL355816.1-201ENST00000607951 118 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AL021918.2-201ENST00000613415 194 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AL442067.2-201ENST00000614033 363 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AL096712.1-201ENST00000614561 159 ntBASIC5.55□□□□□ -1.52
RNF4P78317 SAMMSON-227ENST00000642114 1199 ntBASIC5.55□□□□□ -1.52
RNF4P78317 AL731532.1-201ENST00000623972 4236 ntBASIC5.55□□□□□ -1.52
RNF4P78317 BRAFP1-201ENST00000445336 2703 ntBASIC5.55□□□□□ -1.52
RNF4P78317 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
RNF4P78317 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.55□□□□□ -1.52
RNF4P78317 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.55□□□□□ -1.52
RNF4P78317 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.55□□□□□ -1.52
RNF4P78317 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
RNF4P78317 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.54□□□□□ -1.52
RNF4P78317 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
RNF4P78317 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 Y_RNA.72-201ENST00000362894 103 ntBASIC5.54□□□□□ -1.52
RNF4P78317 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.54□□□□□ -1.52
RNF4P78317 RNU1-39P-201ENST00000383897 165 ntBASIC5.54□□□□□ -1.52
RNF4P78317 RNU6-730P-201ENST00000383954 104 ntBASIC5.54□□□□□ -1.52
RNF4P78317 MIR649-201ENST00000384843 97 ntBASIC5.54□□□□□ -1.52
RNF4P78317 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 MYL6P5-201ENST00000412707 459 ntBASIC5.54□□□□□ -1.52
RNF4P78317 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.54□□□□□ -1.52
RNF4P78317 MTATP6P18-201ENST00000417994 673 ntBASIC5.54□□□□□ -1.52
RNF4P78317 AC015977.1-201ENST00000418887 292 ntBASIC5.54□□□□□ -1.52
RNF4P78317 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC5.54□□□□□ -1.52
RNF4P78317 AL731534.1-201ENST00000434711 269 ntBASIC5.54□□□□□ -1.52
RNF4P78317 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC5.54□□□□□ -1.52
RNF4P78317 SDC4P-201ENST00000453285 601 ntBASIC5.54□□□□□ -1.52
RNF4P78317 GEMIN2P1-201ENST00000454246 752 ntBASIC5.54□□□□□ -1.52
RNF4P78317 RN7SL72P-201ENST00000460697 269 ntBASIC5.54□□□□□ -1.52
RNF4P78317 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC5.54□□□□□ -1.52
RNF4P78317 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 RNA5SP438-201ENST00000516561 112 ntBASIC5.54□□□□□ -1.52
RNF4P78317 RNU6-201P-201ENST00000517100 61 ntBASIC5.54□□□□□ -1.52
RNF4P78317 HSPA8P13-201ENST00000523715 472 ntBASIC5.54□□□□□ -1.52
RNF4P78317 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.54□□□□□ -1.52
RNF4P78317 AC093027.1-201ENST00000546698 429 ntBASIC5.54□□□□□ -1.52
RNF4P78317 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 MIR132-201ENST00000591554 101 ntBASIC5.54□□□□□ -1.52
RNF4P78317 AC011468.4-201ENST00000603942 409 ntBASIC5.54□□□□□ -1.52
RNF4P78317 uc_338.26-201ENST00000612659 160 ntBASIC5.54□□□□□ -1.52
RNF4P78317 MIR6861-201ENST00000618657 64 ntBASIC5.54□□□□□ -1.52
RNF4P78317 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.54□□□□□ -1.52
RNF4P78317 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.54□□□□□ -1.52
RNF4P78317 AC092125.1-201ENST00000562568 1995 ntBASIC5.54□□□□□ -1.52
RNF4P78317 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 NUP58P1-201ENST00000502546 1738 ntBASIC5.54□□□□□ -1.52
RNF4P78317 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RNF4P78317 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.54□□□□□ -1.52
RNF4P78317 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
RNF4P78317 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
RNF4P78317 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RNF4P78317 SELENOWP1-201ENST00000322792 252 ntBASIC5.53□□□□□ -1.52
RNF4P78317 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
RNF4P78317 RNU6-767P-201ENST00000384132 107 ntBASIC5.53□□□□□ -1.52
RNF4P78317 FGFR1OP2P1-201ENST00000395943 500 ntBASIC5.53□□□□□ -1.52
RNF4P78317 BTBD10P2-201ENST00000404779 676 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AL023807.1-201ENST00000407932 359 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AC078974.1-201ENST00000411597 223 ntBASIC5.53□□□□□ -1.52
RNF4P78317 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.53□□□□□ -1.52
RNF4P78317 BX284632.2-201ENST00000421091 399 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.53□□□□□ -1.52
RNF4P78317 AL353777.1-201ENST00000425552 326 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AC099677.3-201ENST00000427081 395 ntBASIC5.53□□□□□ -1.52
RNF4P78317 AC104837.2-201ENST00000427236 424 ntBASIC5.53□□□□□ -1.52
RNF4P78317 TAAR7P-201ENST00000436141 242 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms