Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 AC083843.2-201ENST00000568248 6253 ntBASIC3.84□□□□□ -1.79
COL4A4P53420 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC3.84□□□□□ -1.79
COL4A4P53420 AC093535.2-201ENST00000624769 2326 ntBASIC3.84□□□□□ -1.79
COL4A4P53420 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL4A4P53420 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL4A4P53420 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.84□□□□□ -1.79
COL4A4P53420 TMED11P-201ENST00000479478 690 ntBASIC3.84□□□□□ -1.79
COL4A4P53420 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC3.84□□□□□ -1.79
COL4A4P53420 BDH2P1-201ENST00000602288 736 ntBASIC3.84□□□□□ -1.79
COL4A4P53420 AC068790.5-201ENST00000602741 355 ntBASIC3.84□□□□□ -1.79
COL4A4P53420 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.84□□□□□ -1.79
COL4A4P53420 AC119674.1-212ENST00000641155 993 ntBASIC3.84□□□□□ -1.79
COL4A4P53420 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
COL4A4P53420 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.79
COL4A4P53420 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL4A4P53420 MTND4P26-201ENST00000415971 1359 ntBASIC3.84□□□□□ -1.79
COL4A4P53420 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A4P53420 RNA5SP42-201ENST00000364278 115 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 HMGN2P8-201ENST00000391458 268 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 AC017079.2-201ENST00000416102 485 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 AC073310.1-201ENST00000423226 1033 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.84□□□□□ -1.8
COL4A4P53420 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 RPL26P28-201ENST00000451325 435 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 RBMY2UP-201ENST00000453474 324 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.84□□□□□ -1.8
COL4A4P53420 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.84□□□□□ -1.8
COL4A4P53420 RPL21P8-201ENST00000465083 535 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 AC069499.1-201ENST00000489433 509 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.84□□□□□ -1.8
COL4A4P53420 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.84□□□□□ -1.8
COL4A4P53420 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.84□□□□□ -1.8
COL4A4P53420 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.84□□□□□ -1.8
COL4A4P53420 AC023161.2-201ENST00000551218 780 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A4P53420 AL121594.4-201ENST00000556211 1196 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 MIR5004-201ENST00000579078 107 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.84□□□□□ -1.8
COL4A4P53420 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A4P53420 RPAP2P1-201ENST00000603626 1168 ntBASIC3.84□□□□□ -1.8
COL4A4P53420 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A4P53420 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A4P53420 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A4P53420 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC3.84□□□□□ -1.8
COL4A4P53420 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A4P53420 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A4P53420 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
COL4A4P53420 MFSD8-233ENST00000641482 4860 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A4P53420 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.83□□□□□ -1.8
COL4A4P53420 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC3.83□□□□□ -1.8
COL4A4P53420 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A4P53420 AC007685.1-201ENST00000329806 452 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 SNORA38.1-201ENST00000364172 131 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 SEPT7P2-202ENST00000398921 823 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.83□□□□□ -1.8
COL4A4P53420 AJ239321.1-201ENST00000424255 564 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 OSTCP5-201ENST00000425293 453 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.83□□□□□ -1.8
COL4A4P53420 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC3.83□□□□□ -1.8
COL4A4P53420 AC114982.2-201ENST00000461396 358 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 RN7SL93P-201ENST00000463035 293 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC3.83□□□□□ -1.8
COL4A4P53420 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.83□□□□□ -1.8
COL4A4P53420 AC010486.1-201ENST00000511793 424 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.83□□□□□ -1.8
COL4A4P53420 MIR5680-201ENST00000577577 84 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC3.83□□□□□ -1.8
COL4A4P53420 MIR4276-201ENST00000584832 70 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 BNIP3P10-201ENST00000605360 577 ntBASIC3.83□□□□□ -1.8
COL4A4P53420 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A4P53420 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A4P53420 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A4P53420 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.83□□□□□ -1.8
COL4A4P53420 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.83□□□□□ -1.8
COL4A4P53420 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A4P53420 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A4P53420 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A4P53420 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.83□□□□□ -1.8
COL4A4P53420 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A4P53420 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A4P53420 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
COL4A4P53420 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A4P53420 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.82□□□□□ -1.8
COL4A4P53420 AC019070.1-201ENST00000415008 1024 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 AC002075.2-201ENST00000425207 252 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 HIGD1AP12-201ENST00000427832 281 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 UBE2V2P4-201ENST00000447495 259 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 AC099560.2-201ENST00000457554 255 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 SYT14P1-201ENST00000481459 721 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.82□□□□□ -1.8
COL4A4P53420 SNORA48.9-201ENST00000516419 162 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.82□□□□□ -1.8
COL4A4P53420 AC019227.1-201ENST00000526902 510 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 AC011611.1-201ENST00000552179 197 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 AL606834.2-201ENST00000602954 668 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 MTCO3P22-201ENST00000603219 784 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 AC069209.1-201ENST00000619282 651 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms