Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH6P52701 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH6P52701 AC008065.1-201ENST00000428525 348 ntBASIC5.03□□□□□ -1.6
MSH6P52701 AC006480.1-201ENST00000449887 378 ntBASIC5.03□□□□□ -1.6
MSH6P52701 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.03□□□□□ -1.6
MSH6P52701 AC004069.2-201ENST00000505438 1114 ntBASIC5.03□□□□□ -1.6
MSH6P52701 AC008638.3-201ENST00000603341 463 ntBASIC5.03□□□□□ -1.6
MSH6P52701 AL713922.2-201ENST00000619384 716 ntBASIC5.03□□□□□ -1.6
MSH6P52701 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC5.03□□□□□ -1.6
MSH6P52701 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.02□□□□□ -1.61
MSH6P52701 CD36-221ENST00000534394 1741 ntTSL 2 BASIC5.02□□□□□ -1.61
MSH6P52701 AC118273.1-201ENST00000525324 3006 ntBASIC5.02□□□□□ -1.61
MSH6P52701 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
MSH6P52701 AC024341.1-201ENST00000526444 1552 ntBASIC5.02□□□□□ -1.61
MSH6P52701 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
MSH6P52701 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH6P52701 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSH6P52701 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.02□□□□□ -1.61
MSH6P52701 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSH6P52701 BX323014.1-201ENST00000412876 237 ntBASIC5.02□□□□□ -1.61
MSH6P52701 AC011742.1-201ENST00000431448 434 ntBASIC5.02□□□□□ -1.61
MSH6P52701 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC5.02□□□□□ -1.61
MSH6P52701 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.02□□□□□ -1.61
MSH6P52701 RPL5P30-201ENST00000465511 891 ntBASIC5.02□□□□□ -1.61
MSH6P52701 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH6P52701 AC008011.1-201ENST00000545989 227 ntBASIC5.02□□□□□ -1.61
MSH6P52701 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.02□□□□□ -1.61
MSH6P52701 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSH6P52701 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSH6P52701 AL354976.1-201ENST00000613843 387 ntBASIC5.02□□□□□ -1.61
MSH6P52701 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSH6P52701 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH6P52701 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSH6P52701 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSH6P52701 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
MSH6P52701 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSH6P52701 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH6P52701 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH6P52701 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
MSH6P52701 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH6P52701 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSH6P52701 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC5.01□□□□□ -1.61
MSH6P52701 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
MSH6P52701 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSH6P52701 ELOCP8-201ENST00000439309 332 ntBASIC5.01□□□□□ -1.61
MSH6P52701 ELOCP15-201ENST00000442090 332 ntBASIC5.01□□□□□ -1.61
MSH6P52701 VN1R25P-201ENST00000443385 738 ntBASIC5.01□□□□□ -1.61
MSH6P52701 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSH6P52701 VN1R40P-201ENST00000455196 941 ntBASIC5.01□□□□□ -1.61
MSH6P52701 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH6P52701 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH6P52701 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH6P52701 RNA5SP341-201ENST00000516261 117 ntBASIC5.01□□□□□ -1.61
MSH6P52701 MYL12AP1-201ENST00000518490 515 ntBASIC5.01□□□□□ -1.61
MSH6P52701 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH6P52701 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.01□□□□□ -1.61
MSH6P52701 UBE2NP1-201ENST00000545592 458 ntBASIC5.01□□□□□ -1.61
MSH6P52701 IGKV2OR2-8-201ENST00000558710 300 ntBASIC5.01□□□□□ -1.61
MSH6P52701 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH6P52701 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSH6P52701 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSH6P52701 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5□□□□□ -1.61
MSH6P52701 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
MSH6P52701 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5□□□□□ -1.61
MSH6P52701 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
MSH6P52701 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5□□□□□ -1.61
MSH6P52701 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5□□□□□ -1.61
MSH6P52701 AC010655.1-201ENST00000449336 292 ntBASIC5□□□□□ -1.61
MSH6P52701 CCRL1P1-201ENST00000449542 1053 ntBASIC5□□□□□ -1.61
MSH6P52701 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5□□□□□ -1.61
MSH6P52701 AC091544.1-201ENST00000484702 348 ntBASIC5□□□□□ -1.61
MSH6P52701 AC080014.1-201ENST00000496877 1201 ntBASIC5□□□□□ -1.61
MSH6P52701 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC5□□□□□ -1.61
MSH6P52701 AC034105.3-201ENST00000565294 442 ntBASIC5□□□□□ -1.61
MSH6P52701 AL390816.3-201ENST00000604527 1066 ntBASIC5□□□□□ -1.61
MSH6P52701 AL161912.3-201ENST00000605404 628 ntBASIC5□□□□□ -1.61
MSH6P52701 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
MSH6P52701 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5□□□□□ -1.61
MSH6P52701 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5□□□□□ -1.61
MSH6P52701 MTND4P26-201ENST00000415971 1359 ntBASIC5□□□□□ -1.61
MSH6P52701 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
MSH6P52701 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5□□□□□ -1.61
MSH6P52701 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.99□□□□□ -1.61
MSH6P52701 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
MSH6P52701 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
MSH6P52701 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.99□□□□□ -1.61
MSH6P52701 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSH6P52701 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSH6P52701 RNA5SP39-201ENST00000411245 120 ntBASIC4.99□□□□□ -1.61
MSH6P52701 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.99□□□□□ -1.61
MSH6P52701 TPTE2P3-201ENST00000441562 1189 ntBASIC4.99□□□□□ -1.61
MSH6P52701 NANOGNBP1-201ENST00000448444 480 ntBASIC4.99□□□□□ -1.61
MSH6P52701 RPL21P13-201ENST00000488305 481 ntBASIC4.99□□□□□ -1.61
MSH6P52701 AC139783.2-201ENST00000504847 1145 ntBASIC4.99□□□□□ -1.61
MSH6P52701 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.99□□□□□ -1.61
MSH6P52701 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.99□□□□□ -1.61
MSH6P52701 AC118465.1-201ENST00000513820 1271 ntBASIC4.99□□□□□ -1.61
MSH6P52701 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.99□□□□□ -1.61
MSH6P52701 AP000255.1-201ENST00000610276 676 ntBASIC4.99□□□□□ -1.61
MSH6P52701 AC009950.2-201ENST00000636548 183 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms