Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC6.15□□□□□ -1.42
MSX1P28360 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 AC245291.3-201ENST00000443400 292 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC6.15□□□□□ -1.42
MSX1P28360 TVP23CP1-201ENST00000450317 639 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC005297.2-201ENST00000450430 606 ntBASIC6.15□□□□□ -1.42
MSX1P28360 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 HMGB1P4-201ENST00000455362 567 ntBASIC6.15□□□□□ -1.42
MSX1P28360 SNRPFP3-201ENST00000457792 225 ntBASIC6.15□□□□□ -1.42
MSX1P28360 RPL7P43-201ENST00000478876 753 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC116562.3-201ENST00000506136 177 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC097473.1-201ENST00000508142 408 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC108471.1-201ENST00000513977 287 ntBASIC6.15□□□□□ -1.42
MSX1P28360 Y_RNA.661-201ENST00000516003 99 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC105031.1-201ENST00000518550 476 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX1P28360 AC068587.5-201ENST00000528506 175 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX1P28360 AC109635.4-202ENST00000531666 412 ntBASIC6.15□□□□□ -1.42
MSX1P28360 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.15□□□□□ -1.42
MSX1P28360 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX1P28360 AC068213.1-201ENST00000625124 226 ntBASIC6.15□□□□□ -1.42
MSX1P28360 AC008013.2-202ENST00000637965 364 ntBASIC6.15□□□□□ -1.42
MSX1P28360 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX1P28360 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.15□□□□□ -1.43
MSX1P28360 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.43
MSX1P28360 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
MSX1P28360 MAPK10-261ENST00000641050 3109 ntBASIC6.15□□□□□ -1.43
MSX1P28360 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.15□□□□□ -1.43
MSX1P28360 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.43
MSX1P28360 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.15□□□□□ -1.43
MSX1P28360 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
MSX1P28360 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
MSX1P28360 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
MSX1P28360 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.43
MSX1P28360 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
MSX1P28360 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.14□□□□□ -1.43
MSX1P28360 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 EFTUD1P2-201ENST00000514817 1603 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC092821.3-202ENST00000641304 2767 ntBASIC6.14□□□□□ -1.43
MSX1P28360 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 AC074141.1-201ENST00000588129 2995 ntBASIC6.14□□□□□ -1.43
MSX1P28360 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX1P28360 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
MSX1P28360 RNU1-35P-201ENST00000362782 153 ntBASIC6.14□□□□□ -1.43
MSX1P28360 RNY3P13-201ENST00000365542 102 ntBASIC6.14□□□□□ -1.43
MSX1P28360 SNORA64.3-201ENST00000365647 134 ntBASIC6.14□□□□□ -1.43
MSX1P28360 SNORA75B-201ENST00000384053 137 ntBASIC6.14□□□□□ -1.43
MSX1P28360 Y_RNA.552-201ENST00000384665 112 ntBASIC6.14□□□□□ -1.43
MSX1P28360 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
MSX1P28360 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 AL391419.1-201ENST00000398901 1275 ntBASIC6.14□□□□□ -1.43
MSX1P28360 RN7SKP296-201ENST00000411185 341 ntBASIC6.14□□□□□ -1.43
MSX1P28360 RNU2-64P-201ENST00000411315 191 ntBASIC6.14□□□□□ -1.43
MSX1P28360 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.14□□□□□ -1.43
MSX1P28360 AL713922.1-201ENST00000416477 747 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX1P28360 AC093155.2-201ENST00000420734 937 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX1P28360 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX1P28360 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 RPL12P11-201ENST00000439970 501 ntBASIC6.14□□□□□ -1.43
MSX1P28360 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX1P28360 TRBV1-201ENST00000476502 284 ntBASIC6.14□□□□□ -1.43
MSX1P28360 HMGN1P9-201ENST00000515212 298 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX1P28360 RNA5SP503-201ENST00000517047 117 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC087854.1-201ENST00000519706 414 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC011979.2-201ENST00000527568 352 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AP000827.1-201ENST00000527814 258 ntBASIC6.14□□□□□ -1.43
MSX1P28360 CASP1-212ENST00000531166 300 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX1P28360 MIR4703-201ENST00000577728 79 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC138761.3-201ENST00000579993 334 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC104662.1-201ENST00000604448 511 ntBASIC6.14□□□□□ -1.43
MSX1P28360 HNRNPA3P9-201ENST00000604913 979 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC018889.1-201ENST00000605372 397 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AL121612.2-201ENST00000612261 482 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC107871.2-201ENST00000612894 502 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC004241.2-201ENST00000614562 444 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AL445647.2-201ENST00000615170 130 ntBASIC6.14□□□□□ -1.43
MSX1P28360 U2.1-201ENST00000618978 145 ntBASIC6.14□□□□□ -1.43
MSX1P28360 AC244100.1-202ENST00000621554 382 ntBASIC6.14□□□□□ -1.43
MSX1P28360 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
MSX1P28360 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms