Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CEACAMP9-201ENST00000442990 513 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 TPT1P13-201ENST00000449760 499 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 RPS29P22-201ENST00000472363 168 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
NKX3-1Q99801 RPL23AP72-201ENST00000492447 435 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 RNU6-311P-201ENST00000516224 102 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 HIGD1AP5-201ENST00000529959 259 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC068446.3-201ENST00000555285 382 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 MIR4330-201ENST00000579077 105 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 VN1R83P-201ENST00000595685 445 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 RPL7P50-201ENST00000600588 727 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC020634.1-201ENST00000608701 549 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC087683.2-201ENST00000611384 326 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
NKX3-1Q99801 MIR6853-201ENST00000619642 74 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 U3.53-201ENST00000628922 216 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 CDRT1-208ENST00000630868 794 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 AC055839.1-201ENST00000634467 498 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 BMS1P21-201ENST00000634565 365 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 LINC02211-204ENST00000642024 1070 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 Z73965.1-201ENST00000623412 2297 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NKX3-1Q99801 DCAF13P3-201ENST00000561147 1334 ntBASIC3.89□□□□□ -1.79
NKX3-1Q99801 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NKX3-1Q99801 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
NKX3-1Q99801 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
NKX3-1Q99801 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC012618.3-205ENST00000637896 1496 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC016716.1-201ENST00000265882 708 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 OR10J6P-201ENST00000289731 930 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 RNU1-44P-201ENST00000384453 163 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 MIR16-1-201ENST00000385271 89 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 SNORA40.2-201ENST00000390847 128 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 RNU2-65P-201ENST00000410162 185 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 RNA5SP113-201ENST00000410486 84 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 SNRPFP1-201ENST00000414761 252 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC019050.1-201ENST00000418508 492 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AL513175.2-201ENST00000422071 443 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 NRBF2P3-201ENST00000432731 865 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC069285.2-201ENST00000440210 275 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 RPL23AP93-201ENST00000440847 484 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 SCARNA10-201ENST00000459255 330 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 RN7SL354P-201ENST00000469282 294 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC011352.3-201ENST00000505162 593 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC118282.2-201ENST00000508739 374 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC109471.1-201ENST00000511631 612 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC092593.2-201ENST00000513866 913 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 OR5M2P-201ENST00000529003 936 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 OR4C2P-201ENST00000530855 1064 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC137768.1-201ENST00000549998 553 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC063949.1-201ENST00000552900 865 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 MIR4737-201ENST00000583979 81 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 VN1R84P-201ENST00000593697 235 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC234772.3-201ENST00000602277 528 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AL391358.1-201ENST00000605342 190 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 Z98200.1-201ENST00000607298 470 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AL592148.2-201ENST00000612210 372 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AL138721.1-201ENST00000616756 179 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC009159.2-201ENST00000617603 606 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC097520.1-201ENST00000624435 385 ntBASIC3.88□□□□□ -1.79
NKX3-1Q99801 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC3.88□□□□□ -1.79
NKX3-1Q99801 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NKX3-1Q99801 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms