Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 DUTP6-201ENST00000425573 462 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AL138785.1-201ENST00000425821 331 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 BRWD1P3-201ENST00000428816 390 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AL365400.1-201ENST00000431854 640 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 NPM1P18-201ENST00000434232 732 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 PCNPP2-201ENST00000441651 455 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AL118496.2-201ENST00000448300 230 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 PPIA-203ENST00000451562 544 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 RN7SL393P-201ENST00000463588 296 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 GMFBP1-201ENST00000467831 427 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC004062.1-201ENST00000509926 645 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC105417.1-201ENST00000514691 285 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 RNA5SP418-201ENST00000515951 117 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 RNU2-10P-201ENST00000516375 211 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC107953.1-201ENST00000522216 297 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC093027.1-201ENST00000546698 429 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC078814.3-201ENST00000553036 491 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 TPRX1P1-201ENST00000557620 319 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 RN7SL66P-201ENST00000582099 264 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 RN7SL475P-201ENST00000583379 298 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 MIR212-201ENST00000586026 110 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 GLYATL1P2-202ENST00000588046 902 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 MAPK10-287ENST00000641217 3037 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC244517.1-201ENST00000606030 2086 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 AC009779.8-201ENST00000641684 4384 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
CCDC140Q96MF4 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.95□□□□□ -1.62
CCDC140Q96MF4 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC022164.1-201ENST00000568767 2673 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 MTND4P23-201ENST00000447723 1363 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC067945.1-201ENST00000342609 618 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC005294.1-201ENST00000355509 281 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 Y_RNA.58-201ENST00000362807 102 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 Y_RNA.154-201ENST00000363624 102 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 RNU6-263P-201ENST00000363811 107 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 RNY3P1-201ENST00000365085 102 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 RNY3-201ENST00000365484 102 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 SNORA64.3-201ENST00000365647 134 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 Y_RNA.490-201ENST00000384413 102 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AL356057.2-201ENST00000403318 432 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 RNU4-78P-201ENST00000410940 126 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 UBE2V1P14-201ENST00000415815 558 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 RPL34P6-201ENST00000432390 345 ntBASIC4.94□□□□□ -1.62
CCDC140Q96MF4 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC140Q96MF4 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms