Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL358794.1-201ENST00000445689 381 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 NUTF2P3-201ENST00000448540 384 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 GTF2IP12-201ENST00000456547 356 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 RNU6-599P-201ENST00000459383 107 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 RNU6-1193P-201ENST00000459461 107 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC109458.1-201ENST00000508858 316 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 RNU6-1004P-201ENST00000516584 111 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AL132857.1-201ENST00000555180 708 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC018552.1-201ENST00000562099 811 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 MIR4700-201ENST00000578311 74 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC011477.5-201ENST00000586571 259 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AL049844.2-201ENST00000604280 628 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 RNU6-368P-201ENST00000620928 107 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 RNU6-538P-201ENST00000622329 107 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC124312.6-202ENST00000623624 418 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC073869.7-201ENST00000640874 297 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC119674.1-212ENST00000641155 993 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC020633.1-201ENST00000468439 2247 ntBASIC4.31□□□□□ -1.72
SIX2Q9NPC8 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SIX2Q9NPC8 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 MTCO1P18-201ENST00000455518 1419 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 MTND4P26-201ENST00000415971 1359 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC000123.3-201ENST00000624029 4975 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 RNA5SP130-201ENST00000364431 114 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AL603865.2-201ENST00000401679 213 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 RNA5SP296-201ENST00000410523 111 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 OR51A6P-201ENST00000418680 1004 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 USP9YP21-201ENST00000420603 432 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC092647.1-201ENST00000420654 287 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AL391219.1-201ENST00000422570 483 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 OR5BE1P-201ENST00000425977 939 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 FO393419.3-201ENST00000428741 282 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC016712.1-201ENST00000431088 378 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 KCTD9P3-201ENST00000434597 1169 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 MTND1P26-201ENST00000440488 538 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AL161722.1-201ENST00000446972 1032 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AL139824.2-201ENST00000458731 1095 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC020898.1-201ENST00000474167 787 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 OR8K4P-201ENST00000534608 872 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 YPEL5P3-201ENST00000547227 352 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC025884.1-201ENST00000556034 378 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC023575.1-201ENST00000580510 358 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 MIR3939-201ENST00000582614 106 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 VN1R87P-201ENST00000596706 487 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AL135786.2-201ENST00000608422 615 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 OR2BH1P-201ENST00000608850 864 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 MLECP1-201ENST00000615893 709 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SIX2Q9NPC8 AC097655.1-201ENST00000635075 318 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 OR5BE1P-202ENST00000641168 1176 ntBASIC4.3□□□□□ -1.72
SIX2Q9NPC8 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
SIX2Q9NPC8 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SIX2Q9NPC8 UBE3AP2-201ENST00000429033 2259 ntBASIC4.29□□□□□ -1.72
SIX2Q9NPC8 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SIX2Q9NPC8 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SIX2Q9NPC8 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms