Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC108022.1-201ENST00000493466 478 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC093720.1-201ENST00000505681 714 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 OR51K1P-201ENST00000510214 950 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC012182.1-201ENST00000570133 895 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC015912.2-201ENST00000571053 181 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC091178.1-203ENST00000584586 279 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 YWHAQP7-201ENST00000603536 658 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 SCN1A-220ENST00000641603 12506 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 ZNF33BP1-201ENST00000452497 1834 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 Z98755.1-201ENST00000407015 1384 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AL022393.1-201ENST00000625142 1677 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AL672167.1-204ENST00000641875 3017 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 Y_RNA.110-201ENST00000363220 99 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 SNORA56-201ENST00000383966 129 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 MTND4P22-201ENST00000413116 1169 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AL445183.3-201ENST00000414168 502 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 RPL36AP10-201ENST00000421785 322 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC012519.1-201ENST00000424588 610 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC011998.1-201ENST00000433403 117 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 ZNF736P6Y-201ENST00000447526 1213 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC012671.1-201ENST00000451912 203 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 RPS17P11-201ENST00000474297 293 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 RN7SL810P-201ENST00000493031 276 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 RNA5SP73-201ENST00000516744 108 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 OR4A45P-201ENST00000529954 901 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC009643.1-201ENST00000532030 391 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 OR4G1P-201ENST00000588632 938 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 MTATP6P2-201ENST00000603319 678 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC009948.4-201ENST00000604692 675 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC012409.3-201ENST00000611343 981 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 AC020923.1-201ENST00000624021 917 ntBASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP4AQ9BY43 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AC011266.1-201ENST00000624119 3569 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 RPL31P1-201ENST00000398116 372 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 RNU2-37P-201ENST00000410695 177 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 RN7SKP216-201ENST00000411050 312 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AC244098.2-201ENST00000422068 99 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 RPL23AP93-201ENST00000440847 484 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AL591473.1-201ENST00000464297 313 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AC053481.1-201ENST00000467217 306 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 ARL4AP1-201ENST00000503220 705 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 RNA5SP464-201ENST00000516251 108 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 RN7SKP116-201ENST00000516902 319 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AC034205.1-201ENST00000520621 638 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AP003385.6-201ENST00000531603 374 ntBASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.81□□□□□ -1.48
CHMP4AQ9BY43 GSTP1P1-201ENST00000548078 319 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms