Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 RN7SKP111-201ENST00000410349 271 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 RNU4-47P-201ENST00000410876 114 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC011742.1-201ENST00000431448 434 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AL133477.1-201ENST00000457472 514 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 TPT1P1-201ENST00000458495 518 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 MORF4L2P1-201ENST00000503761 858 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC022080.3-201ENST00000544433 482 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 TRAV15-201ENST00000556680 249 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AP000255.1-201ENST00000610276 676 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC021755.1-201ENST00000559747 1447 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 Z95327.2-201ENST00000414579 1873 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC112198.1-201ENST00000505369 1220 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 snoU109.6-201ENST00000516831 118 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 NDUFB9P3-201ENST00000521269 501 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS13AQ96RL7 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS13AQ96RL7 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
VPS13AQ96RL7 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS13AQ96RL7 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
VPS13AQ96RL7 RNU1-70P-201ENST00000362618 164 ntBASIC3.34□□□□□ -1.87
VPS13AQ96RL7 Y_RNA.466-201ENST00000384294 113 ntBASIC3.34□□□□□ -1.87
VPS13AQ96RL7 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS13AQ96RL7 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS13AQ96RL7 DMD-205ENST00000359836 7339 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS13AQ96RL7 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
VPS13AQ96RL7 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
VPS13AQ96RL7 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC3.34□□□□□ -1.88
VPS13AQ96RL7 TXNP1-201ENST00000441872 371 ntBASIC3.34□□□□□ -1.88
VPS13AQ96RL7 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.34□□□□□ -1.88
VPS13AQ96RL7 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.34□□□□□ -1.88
VPS13AQ96RL7 RPS4XP13-201ENST00000483219 789 ntBASIC3.34□□□□□ -1.88
VPS13AQ96RL7 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.34□□□□□ -1.88
VPS13AQ96RL7 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.34□□□□□ -1.88
VPS13AQ96RL7 AC100770.1-201ENST00000532310 322 ntBASIC3.34□□□□□ -1.88
VPS13AQ96RL7 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.34□□□□□ -1.88
VPS13AQ96RL7 AC090312.2-201ENST00000582687 378 ntBASIC3.34□□□□□ -1.88
VPS13AQ96RL7 AC100793.4-201ENST00000613683 429 ntBASIC3.34□□□□□ -1.88
VPS13AQ96RL7 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
VPS13AQ96RL7 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC3.34□□□□□ -1.88
VPS13AQ96RL7 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC063979.1-201ENST00000415539 377 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC004024.1-201ENST00000549244 247 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC106734.1-201ENST00000568646 663 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC027281.1-201ENST00000574178 758 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 ZNF826P-207ENST00000622273 1910 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AL356274.2-201ENST00000624379 3752 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC098824.1-201ENST00000453565 980 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 SNRPCP3-201ENST00000474888 476 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 RPS29P26-201ENST00000477483 171 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 PSMA2P1-201ENST00000526365 646 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 OR4A12P-201ENST00000530847 918 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 VDAC2P1-201ENST00000399358 958 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 RN7SL863P-201ENST00000462370 296 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 HMGB1P3-201ENST00000502802 616 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AP000916.1-201ENST00000533869 835 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC079089.3-201ENST00000603094 673 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AL773545.4-201ENST00000637262 310 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AL513478.4-201ENST00000641636 310 ntBASIC3.33□□□□□ -1.88
VPS13AQ96RL7 AC104581.5-201ENST00000624171 7141 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 AL359693.1-201ENST00000614959 2407 ntBASIC3.32□□□□□ -1.88
VPS13AQ96RL7 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS13AQ96RL7 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms