Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.7□□□□□ -1.66
USP41Q3LFD5 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC006042.3-201ENST00000454684 1469 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AL158163.1-201ENST00000603915 1649 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 SNORA68.2-201ENST00000391263 128 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 ANAPC10P1-201ENST00000395991 556 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 HDGFP1-201ENST00000405943 252 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 MTCYBP15-201ENST00000433123 1127 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 RPL23AP52-201ENST00000439311 478 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC002542.1-201ENST00000440683 193 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC009263.1-201ENST00000441193 1239 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 RNU6-1218P-201ENST00000458990 108 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 RPS7P7-201ENST00000463499 571 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 RPL35P6-201ENST00000490024 372 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 HPRT1P2-201ENST00000505250 544 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC113420.1-201ENST00000507903 571 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC026402.1-201ENST00000513642 170 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 IGKV2-36-201ENST00000519999 223 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC027455.1-201ENST00000574104 594 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 HMGB2P1-201ENST00000591146 634 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 EIF1P6-201ENST00000600054 334 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC013244.3-201ENST00000605614 388 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC008966.2-201ENST00000606157 453 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 VN1R74P-201ENST00000613259 503 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 NXPH1-205ENST00000602349 1953 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC104446.1-201ENST00000613728 1321 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 AL445437.1-201ENST00000623157 3087 ntBASIC4.69□□□□□ -1.66
USP41Q3LFD5 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
USP41Q3LFD5 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP41Q3LFD5 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP41Q3LFD5 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC111188.2-201ENST00000529697 1387 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP41Q3LFD5 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 RNA5SP388-201ENST00000362584 119 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP41Q3LFD5 RNU6-224P-201ENST00000384055 107 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 RNU6-549P-201ENST00000384433 107 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 AL022722.2-201ENST00000402519 180 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 NCSTNP1-201ENST00000406229 144 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 MTATP6P20-201ENST00000414147 562 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 TRGV6-201ENST00000417928 299 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC114814.2-201ENST00000419195 485 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC092634.2-201ENST00000428146 1010 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 AL132765.1-201ENST00000434165 553 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 OR10R1P-201ENST00000441524 1141 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC008958.1-201ENST00000511047 682 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC090751.1-201ENST00000566966 267 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 MTCO1P40-201ENST00000574371 625 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 AL445435.1-201ENST00000604232 665 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
USP41Q3LFD5 AL591034.3-201ENST00000605511 685 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 COX6CP4-201ENST00000605798 228 ntBASIC4.68□□□□□ -1.66
USP41Q3LFD5 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms