Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC011825.1-201ENST00000484967 388 ntBASIC5.82□□□□□ -1.48
CUX1P39880 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC5.82□□□□□ -1.48
CUX1P39880 KLKP1-201ENST00000595979 403 ntBASIC5.82□□□□□ -1.48
CUX1P39880 AC116312.1-201ENST00000606841 314 ntBASIC5.82□□□□□ -1.48
CUX1P39880 AC138932.5-201ENST00000617759 563 ntBASIC5.82□□□□□ -1.48
CUX1P39880 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
CUX1P39880 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
CUX1P39880 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CUX1P39880 AC027290.2-201ENST00000623210 18662 ntBASIC5.82□□□□□ -1.48
CUX1P39880 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CUX1P39880 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CUX1P39880 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
CUX1P39880 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.81□□□□□ -1.48
CUX1P39880 HSPE1P16-201ENST00000426640 348 ntBASIC5.81□□□□□ -1.48
CUX1P39880 RPS29P31-201ENST00000446147 164 ntBASIC5.81□□□□□ -1.48
CUX1P39880 AC022795.1-201ENST00000473808 480 ntBASIC5.81□□□□□ -1.48
CUX1P39880 FCF1P8-201ENST00000510322 597 ntBASIC5.81□□□□□ -1.48
CUX1P39880 AC092868.3-201ENST00000560515 784 ntBASIC5.81□□□□□ -1.48
CUX1P39880 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC5.81□□□□□ -1.48
CUX1P39880 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.81□□□□□ -1.48
CUX1P39880 AC006386.2-201ENST00000624491 75 ntBASIC5.81□□□□□ -1.48
CUX1P39880 AC012005.1-201ENST00000624575 75 ntBASIC5.81□□□□□ -1.48
CUX1P39880 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC5.81□□□□□ -1.48
CUX1P39880 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CUX1P39880 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CUX1P39880 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC5.81□□□□□ -1.48
CUX1P39880 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CUX1P39880 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CUX1P39880 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
CUX1P39880 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CUX1P39880 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC5.8□□□□□ -1.48
CUX1P39880 RPL27AP5-201ENST00000469428 449 ntBASIC5.8□□□□□ -1.48
CUX1P39880 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.8□□□□□ -1.48
CUX1P39880 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC5.8□□□□□ -1.48
CUX1P39880 AC008489.1-201ENST00000524271 483 ntBASIC5.8□□□□□ -1.48
CUX1P39880 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.8□□□□□ -1.48
CUX1P39880 AC006539.2-201ENST00000601729 572 ntBASIC5.8□□□□□ -1.48
CUX1P39880 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.8□□□□□ -1.48
CUX1P39880 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CUX1P39880 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC5.8□□□□□ -1.48
CUX1P39880 RSL24D1P1-201ENST00000404972 493 ntBASIC5.79□□□□□ -1.48
CUX1P39880 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC5.79□□□□□ -1.48
CUX1P39880 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.79□□□□□ -1.48
CUX1P39880 RPL21P109-201ENST00000422213 475 ntBASIC5.79□□□□□ -1.48
CUX1P39880 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC5.79□□□□□ -1.48
CUX1P39880 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC5.79□□□□□ -1.48
CUX1P39880 AC092809.1-201ENST00000441469 474 ntBASIC5.79□□□□□ -1.48
CUX1P39880 AC109925.1-201ENST00000478069 331 ntBASIC5.79□□□□□ -1.48
CUX1P39880 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.79□□□□□ -1.48
CUX1P39880 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC5.79□□□□□ -1.48
CUX1P39880 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC5.79□□□□□ -1.48
CUX1P39880 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.79□□□□□ -1.48
CUX1P39880 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CUX1P39880 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CUX1P39880 AC119744.1-201ENST00000454746 1715 ntBASIC5.79□□□□□ -1.48
CUX1P39880 OR51C1P-202ENST00000641159 1444 ntBASIC5.79□□□□□ -1.48
CUX1P39880 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
CUX1P39880 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.79□□□□□ -1.48
CUX1P39880 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC5.79□□□□□ -1.48
CUX1P39880 RNF19BPX-201ENST00000426224 625 ntBASIC5.79□□□□□ -1.48
CUX1P39880 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC5.79□□□□□ -1.48
CUX1P39880 RPS27AP1-201ENST00000475545 471 ntBASIC5.79□□□□□ -1.48
CUX1P39880 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC5.79□□□□□ -1.48
CUX1P39880 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.79□□□□□ -1.48
CUX1P39880 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC5.79□□□□□ -1.48
CUX1P39880 MTCO3P22-201ENST00000603219 784 ntBASIC5.79□□□□□ -1.48
CUX1P39880 AC073657.2-201ENST00000605661 303 ntBASIC5.79□□□□□ -1.48
CUX1P39880 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC5.79□□□□□ -1.48
CUX1P39880 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CUX1P39880 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
CUX1P39880 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
CUX1P39880 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC5.78□□□□□ -1.48
CUX1P39880 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CUX1P39880 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
CUX1P39880 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC5.78□□□□□ -1.48
CUX1P39880 Z83843.1-201ENST00000604070 3685 ntBASIC5.78□□□□□ -1.48
CUX1P39880 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CUX1P39880 SNORA80A-201ENST00000363922 136 ntBASIC5.78□□□□□ -1.48
CUX1P39880 SNORA44-201ENST00000384584 132 ntBASIC5.78□□□□□ -1.48
CUX1P39880 ATP5HP2-201ENST00000433885 485 ntBASIC5.78□□□□□ -1.48
CUX1P39880 RPS20P1-201ENST00000434853 354 ntBASIC5.78□□□□□ -1.48
CUX1P39880 RPS4XP2-201ENST00000458402 793 ntBASIC5.78□□□□□ -1.48
CUX1P39880 RPL7P48-201ENST00000461513 746 ntBASIC5.78□□□□□ -1.48
CUX1P39880 FTH1P11-201ENST00000517577 551 ntBASIC5.78□□□□□ -1.48
CUX1P39880 CR383656.14-201ENST00000551951 406 ntBASIC5.78□□□□□ -1.48
CUX1P39880 SULT1C2P2-201ENST00000562517 294 ntBASIC5.78□□□□□ -1.48
CUX1P39880 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC5.78□□□□□ -1.48
CUX1P39880 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC5.78□□□□□ -1.48
CUX1P39880 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
CUX1P39880 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC5.78□□□□□ -1.48
CUX1P39880 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC5.78□□□□□ -1.48
CUX1P39880 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
CUX1P39880 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.77□□□□□ -1.49
CUX1P39880 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.77□□□□□ -1.49
CUX1P39880 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CUX1P39880 AL353705.1-201ENST00000433468 480 ntBASIC5.77□□□□□ -1.49
CUX1P39880 SEPT14P1-201ENST00000458703 648 ntBASIC5.77□□□□□ -1.49
CUX1P39880 AC026782.2-201ENST00000510845 636 ntBASIC5.77□□□□□ -1.49
CUX1P39880 AC023141.12-201ENST00000512399 199 ntBASIC5.77□□□□□ -1.49
CUX1P39880 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms