Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
CLDN3O15551 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.35□□□□□ -1.71
CLDN3O15551 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.35□□□□□ -1.71
CLDN3O15551 BNIP3P5-201ENST00000562290 498 ntBASIC4.35□□□□□ -1.71
CLDN3O15551 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.35□□□□□ -1.71
CLDN3O15551 AL592436.1-201ENST00000605135 558 ntBASIC4.35□□□□□ -1.71
CLDN3O15551 AC233309.1-201ENST00000619522 751 ntBASIC4.35□□□□□ -1.71
CLDN3O15551 AC124312.6-202ENST00000623624 418 ntBASIC4.35□□□□□ -1.71
CLDN3O15551 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.35□□□□□ -1.71
CLDN3O15551 AL773545.4-201ENST00000637262 310 ntBASIC4.35□□□□□ -1.71
CLDN3O15551 AL513478.4-201ENST00000641636 310 ntBASIC4.35□□□□□ -1.71
CLDN3O15551 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
CLDN3O15551 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CLDN3O15551 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CLDN3O15551 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CLDN3O15551 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CLDN3O15551 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
CLDN3O15551 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN3O15551 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 RNA5SP399-201ENST00000364003 117 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.34□□□□□ -1.71
CLDN3O15551 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.34□□□□□ -1.71
CLDN3O15551 LAP3P1-201ENST00000403648 294 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 JKAMPP1-201ENST00000413804 919 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 MTND4P24-201ENST00000424002 397 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 MTCO1P54-201ENST00000430139 712 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 AL353093.1-201ENST00000441292 436 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN3O15551 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.34□□□□□ -1.71
CLDN3O15551 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN3O15551 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN3O15551 S100A11P1-201ENST00000477525 312 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 RPS4XP15-201ENST00000489210 795 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 RPL30P11-201ENST00000495304 339 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.34□□□□□ -1.71
CLDN3O15551 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN3O15551 SNORA31.13-201ENST00000516624 135 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN3O15551 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN3O15551 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN3O15551 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.34□□□□□ -1.71
CLDN3O15551 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
CLDN3O15551 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.34□□□□□ -1.71
CLDN3O15551 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN3O15551 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.34□□□□□ -1.71
CLDN3O15551 OR1AB1P-201ENST00000585564 761 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN3O15551 AC022916.3-201ENST00000592961 742 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 AC091167.4-201ENST00000605079 184 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.34□□□□□ -1.71
CLDN3O15551 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.34□□□□□ -1.71
CLDN3O15551 AC104307.1-201ENST00000616142 196 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 AL139089.1-201ENST00000620372 975 ntBASIC4.34□□□□□ -1.71
CLDN3O15551 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN3O15551 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN3O15551 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CLDN3O15551 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CLDN3O15551 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.34□□□□□ -1.71
CLDN3O15551 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN3O15551 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN3O15551 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.33□□□□□ -1.72
CLDN3O15551 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CLDN3O15551 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CLDN3O15551 AP002001.2-201ENST00000529025 1469 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 OR11H5P-202ENST00000641612 1325 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 RNA5SP502-201ENST00000362694 119 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 MTND3P20-201ENST00000407663 186 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 RPL7AP73-201ENST00000413490 353 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN3O15551 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.33□□□□□ -1.72
CLDN3O15551 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 BX119904.1-201ENST00000432026 348 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.33□□□□□ -1.72
CLDN3O15551 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN3O15551 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN3O15551 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.33□□□□□ -1.72
CLDN3O15551 RPL23AP2-201ENST00000471227 466 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 RPS3AP6-201ENST00000484430 795 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 AC093663.2-201ENST00000484625 313 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 VN1R105P-201ENST00000486595 910 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN3O15551 OR4A2P-201ENST00000527276 913 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.33□□□□□ -1.72
CLDN3O15551 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.33□□□□□ -1.72
CLDN3O15551 AC025260.1-201ENST00000548858 430 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.33□□□□□ -1.72
CLDN3O15551 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.33□□□□□ -1.72
CLDN3O15551 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN3O15551 AC099676.1-201ENST00000608886 657 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.33□□□□□ -1.72
CLDN3O15551 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN3O15551 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
CLDN3O15551 FAM91A3P-201ENST00000456826 2544 ntBASIC4.33□□□□□ -1.72
CLDN3O15551 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CLDN3O15551 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.33□□□□□ -1.72
CLDN3O15551 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
CLDN3O15551 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CLDN3O15551 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CLDN3O15551 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CLDN3O15551 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms