Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC018552.3-201ENST00000567416 561 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AP002360.3-201ENST00000607673 710 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AL138478.1-201ENST00000612252 832 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC009237.17-201ENST00000618111 748 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NKX3-1Q99801 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC091046.3-201ENST00000631455 1574 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NKX3-1Q99801 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NKX3-1Q99801 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
NKX3-1Q99801 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NKX3-1Q99801 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
NKX3-1Q99801 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
NKX3-1Q99801 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 ANAPC10P1-201ENST00000395991 556 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 CYB5AP4-201ENST00000396692 399 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 SFR1P1-201ENST00000403720 688 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 RNU6-603P-201ENST00000411403 107 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AL160275.2-201ENST00000412010 394 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 TRGV6-201ENST00000417928 299 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC140479.3-201ENST00000418944 1126 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 RPS3AP37-201ENST00000419176 745 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 PAICSP7-201ENST00000419829 962 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AL035246.1-201ENST00000433554 1255 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 RPL12P46-201ENST00000436610 195 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 TPTE2P3-201ENST00000441562 1189 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 H2AFZP5-201ENST00000446960 382 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AL589880.1-201ENST00000448271 287 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC112492.1-201ENST00000449607 712 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 MRPL42P4-201ENST00000453267 443 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 ISCUP1-201ENST00000454451 448 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 RPS5P7-201ENST00000456664 608 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 RPL37P3-201ENST00000456825 293 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 RN7SL738P-201ENST00000470264 297 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC104763.1-201ENST00000475274 360 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC012158.1-204ENST00000483430 465 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
NKX3-1Q99801 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 Y_RNA.717-201ENST00000517106 92 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC023632.1-201ENST00000518463 375 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 NPM1P6-201ENST00000521088 871 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC100770.1-201ENST00000532310 322 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 OR8K4P-201ENST00000534608 872 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 PDCD5P1-201ENST00000543528 309 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC092747.2-201ENST00000545069 983 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC004217.3-201ENST00000551552 878 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC023813.2-201ENST00000564321 469 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 UBE2FP2-201ENST00000566646 462 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC091042.1-201ENST00000579213 173 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 MIR5708-201ENST00000579723 85 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AP005119.2-201ENST00000579735 1105 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC090312.1-201ENST00000580637 348 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC110743.1-201ENST00000584870 478 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AP001542.2-201ENST00000593141 364 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC010201.1-201ENST00000605051 540 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AP005137.2-201ENST00000609238 400 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC079395.3-201ENST00000615161 484 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC091905.2-201ENST00000623143 306 ntBASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.91□□□□□ -1.78
NKX3-1Q99801 AC139769.1-204ENST00000472297 1931 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms