Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNU6-467P-201ENST00000517027 110 ntBASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SKA3Q8IX90 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SKA3Q8IX90 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 IPO5P1-202ENST00000600039 287 ntBASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC005776.1-201ENST00000603164 290 ntBASIC3.7□□□□□ -1.82
SKA3Q8IX90 PSMA6P4-201ENST00000603247 718 ntBASIC3.7□□□□□ -1.82
SKA3Q8IX90 AL161729.3-201ENST00000603533 673 ntBASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SKA3Q8IX90 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 AL163051.2-201ENST00000618976 735 ntBASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC000123.2-201ENST00000623124 461 ntBASIC3.7□□□□□ -1.82
SKA3Q8IX90 MIR3653-201ENST00000625572 110 ntBASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SKA3Q8IX90 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SKA3Q8IX90 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SKA3Q8IX90 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 METTL21EP-201ENST00000298105 713 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 RNA5SP388-201ENST00000362584 119 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 MIR141-201ENST00000384975 95 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL161909.1-201ENST00000397390 712 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 Z98941.1-201ENST00000407764 100 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 MIR1179-201ENST00000408703 91 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 RN7SKP182-201ENST00000410772 298 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 RNU4-27P-201ENST00000410889 139 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 Y_RNA.625-201ENST00000411256 107 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 UBE2V1P11-201ENST00000411559 285 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC013404.1-201ENST00000413068 249 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 MTND4P11-201ENST00000417020 1058 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 TRGV6-201ENST00000417928 299 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 RPL7P53-201ENST00000421245 739 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 BMS1P19-201ENST00000433925 393 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL031663.1-201ENST00000437445 219 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 CBX1P4-201ENST00000439415 457 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 MED6P1-201ENST00000439659 713 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL353093.1-201ENST00000441292 436 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC078857.1-201ENST00000469870 667 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AP000926.1-201ENST00000479573 241 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC105137.1-201ENST00000484355 562 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC068305.1-201ENST00000497406 726 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC108475.1-201ENST00000507880 950 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 HPRT1P1-201ENST00000509498 657 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 USP9YP5-201ENST00000511770 630 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 SMARCE1P4-201ENST00000523647 241 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 OR4R2P-201ENST00000530815 597 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AP002812.4-201ENST00000532139 286 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC025260.1-201ENST00000548858 430 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 ZNF92P3-201ENST00000596594 954 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL034351.1-201ENST00000605288 668 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 ARF4P1-201ENST00000605447 541 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC116563.2-201ENST00000624751 535 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
SKA3Q8IX90 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA3Q8IX90 NOL8P1-201ENST00000508336 3529 ntBASIC3.69□□□□□ -1.82
SKA3Q8IX90 RNF6P1-201ENST00000444889 1784 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SKA3Q8IX90 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms