Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
COL4A4P53420 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.93□□□□□ -1.78
COL4A4P53420 AC006272.2-201ENST00000594725 163 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AL583832.1-201ENST00000603227 784 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.93□□□□□ -1.78
COL4A4P53420 MIR6715A-201ENST00000615929 79 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.93□□□□□ -1.78
COL4A4P53420 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A4P53420 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC3.93□□□□□ -1.78
COL4A4P53420 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.93□□□□□ -1.78
COL4A4P53420 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
COL4A4P53420 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
COL4A4P53420 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A4P53420 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A4P53420 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A4P53420 AC008079.2-201ENST00000623543 20396 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A4P53420 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A4P53420 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC3.92□□□□□ -1.78
COL4A4P53420 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A4P53420 NACA3P-201ENST00000359690 648 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 HLFP1-201ENST00000402375 499 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.92□□□□□ -1.78
COL4A4P53420 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.92□□□□□ -1.78
COL4A4P53420 IFNNP1-201ENST00000429219 553 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 AC233982.1-201ENST00000451247 436 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A4P53420 SETP12-201ENST00000514068 805 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.92□□□□□ -1.78
COL4A4P53420 RNU2-27P-201ENST00000516185 142 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 RANP9-201ENST00000519957 271 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 DPRXP4-201ENST00000578053 568 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.92□□□□□ -1.78
COL4A4P53420 MIR486-1-201ENST00000612171 68 ntBASIC3.92□□□□□ -1.78
COL4A4P53420 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.92□□□□□ -1.78
COL4A4P53420 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
COL4A4P53420 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
COL4A4P53420 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC3.92□□□□□ -1.78
COL4A4P53420 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
COL4A4P53420 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A4P53420 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
COL4A4P53420 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
COL4A4P53420 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A4P53420 RNA5SP374-201ENST00000362939 125 ntBASIC3.91□□□□□ -1.78
COL4A4P53420 AC234772.1-201ENST00000377927 937 ntBASIC3.91□□□□□ -1.78
COL4A4P53420 AL034403.1-201ENST00000399414 885 ntBASIC3.91□□□□□ -1.78
COL4A4P53420 MTND2P9-201ENST00000422293 931 ntBASIC3.91□□□□□ -1.78
COL4A4P53420 MOB1AP1-201ENST00000430903 535 ntBASIC3.91□□□□□ -1.78
COL4A4P53420 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A4P53420 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.91□□□□□ -1.78
COL4A4P53420 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A4P53420 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A4P53420 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A4P53420 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.91□□□□□ -1.78
COL4A4P53420 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC3.91□□□□□ -1.78
COL4A4P53420 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC3.91□□□□□ -1.78
COL4A4P53420 MIR5186-201ENST00000577504 120 ntBASIC3.91□□□□□ -1.78
COL4A4P53420 MIR4672-201ENST00000583126 81 ntBASIC3.91□□□□□ -1.78
COL4A4P53420 AC104984.5-201ENST00000586878 94 ntBASIC3.91□□□□□ -1.78
COL4A4P53420 AC091905.1-201ENST00000624400 311 ntBASIC3.91□□□□□ -1.78
COL4A4P53420 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A4P53420 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A4P53420 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A4P53420 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.91□□□□□ -1.78
COL4A4P53420 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A4P53420 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
COL4A4P53420 MIR448-201ENST00000362131 111 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
COL4A4P53420 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.9□□□□□ -1.78
COL4A4P53420 RPL21P110-201ENST00000433345 446 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.9□□□□□ -1.78
COL4A4P53420 AC104629.1-201ENST00000494226 508 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 AC093663.1-201ENST00000497190 394 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 AC108941.1-201ENST00000502853 530 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
COL4A4P53420 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.9□□□□□ -1.78
COL4A4P53420 RPL7L1P13-201ENST00000511702 739 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.9□□□□□ -1.78
COL4A4P53420 AP006245.1-201ENST00000522549 120 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.9□□□□□ -1.78
COL4A4P53420 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.9□□□□□ -1.78
COL4A4P53420 TRAV15-201ENST00000556680 249 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.9□□□□□ -1.78
COL4A4P53420 AC010591.1-201ENST00000603941 649 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 AL078595.2-201ENST00000605309 1780 ntBASIC3.9□□□□□ -1.78
COL4A4P53420 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC3.9□□□□□ -1.78
COL4A4P53420 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL4A4P53420 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL4A4P53420 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC3.9□□□□□ -1.78
COL4A4P53420 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
COL4A4P53420 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL4A4P53420 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
COL4A4P53420 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
COL4A4P53420 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A4P53420 AL365440.1-201ENST00000436135 2167 ntBASIC3.9□□□□□ -1.79
COL4A4P53420 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A4P53420 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
COL4A4P53420 RPL23AP57-201ENST00000332361 466 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms