Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG3P49916 TRIM77BP-201ENST00000524985 1119 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AC104383.1-201ENST00000530297 370 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG3P49916 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG3P49916 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.08□□□□□ -1.44
LIG3P49916 AL133457.1-201ENST00000564251 987 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 MIR4675-201ENST00000577898 77 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AC090616.5-202ENST00000582111 297 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AC008752.3-201ENST00000588113 712 ntBASIC6.08□□□□□ -1.44
LIG3P49916 BNIP3P9-201ENST00000603714 553 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.08□□□□□ -1.44
LIG3P49916 AL355816.1-201ENST00000607951 118 ntBASIC6.08□□□□□ -1.44
LIG3P49916 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 AC096861.1-201ENST00000616652 240 ntBASIC6.08□□□□□ -1.44
LIG3P49916 SNORA11.6-201ENST00000619030 128 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.08□□□□□ -1.44
LIG3P49916 AC012150.2-201ENST00000621300 544 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
LIG3P49916 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 AC131971.1-201ENST00000332881 1482 ntBASIC6.08□□□□□ -1.44
LIG3P49916 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIG3P49916 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
LIG3P49916 AP002907.1-201ENST00000606361 1430 ntBASIC6.08□□□□□ -1.44
LIG3P49916 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
LIG3P49916 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.07□□□□□ -1.44
LIG3P49916 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.07□□□□□ -1.44
LIG3P49916 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 Y_RNA.1-201ENST00000352915 104 ntBASIC6.07□□□□□ -1.44
LIG3P49916 Y_RNA.89-201ENST00000363031 102 ntBASIC6.07□□□□□ -1.44
LIG3P49916 U8.3-201ENST00000363321 132 ntBASIC6.07□□□□□ -1.44
LIG3P49916 RNU6-534P-201ENST00000364877 106 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AL078604.1-201ENST00000404609 466 ntBASIC6.07□□□□□ -1.44
LIG3P49916 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG3P49916 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 NMD3P2-201ENST00000421815 761 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG3P49916 MTCO1P20-201ENST00000425366 358 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.07□□□□□ -1.44
LIG3P49916 ISCA1P6-201ENST00000427740 390 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG3P49916 AC023347.2-201ENST00000433994 462 ntBASIC6.07□□□□□ -1.44
LIG3P49916 MTND5P14-201ENST00000441481 1267 ntBASIC6.07□□□□□ -1.44
LIG3P49916 RPL23AP16-201ENST00000441715 421 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG3P49916 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG3P49916 AC005077.1-201ENST00000449226 375 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AC079448.1-201ENST00000449377 373 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AC144530.1-201ENST00000452862 555 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.07□□□□□ -1.44
LIG3P49916 AC026410.2-201ENST00000460281 156 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AC094085.1-201ENST00000468914 584 ntBASIC6.07□□□□□ -1.44
LIG3P49916 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 AC023598.1-201ENST00000472521 361 ntBASIC6.07□□□□□ -1.44
LIG3P49916 MTND1P3-201ENST00000484956 952 ntBASIC6.07□□□□□ -1.44
LIG3P49916 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 THAP6-203ENST00000502620 582 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG3P49916 TMEM251P1-201ENST00000503717 318 ntBASIC6.07□□□□□ -1.44
LIG3P49916 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG3P49916 AC008127.2-201ENST00000549925 1075 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AC068714.1-201ENST00000559623 800 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AL157394.1-201ENST00000562983 1224 ntBASIC6.07□□□□□ -1.44
LIG3P49916 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 AC245014.2-201ENST00000603689 287 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AC246785.4-201ENST00000605374 287 ntBASIC6.07□□□□□ -1.44
LIG3P49916 TUG1_1.1-201ENST00000610654 145 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AL020991.1-201ENST00000612314 373 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AL136228.1-201ENST00000622221 319 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AC004009.2-201ENST00000623016 728 ntBASIC6.07□□□□□ -1.44
LIG3P49916 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 AC099654.10-201ENST00000640395 161 ntBASIC6.07□□□□□ -1.44
LIG3P49916 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 FER-202ENST00000438717 1531 ntTSL 2 BASIC6.07□□□□□ -1.44
LIG3P49916 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.07□□□□□ -1.44
LIG3P49916 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG3P49916 AC011933.2-201ENST00000578539 2790 ntBASIC6.06□□□□□ -1.44
LIG3P49916 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIG3P49916 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
LIG3P49916 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms